CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 7
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30661	Soybean	endoplasmic reticulum	96.15	97.17
VIT_06s0004g08160.t01	Wine grape	plastid	75.31	75.7
Solyc09g015930.2.1	Tomato	plastid	71.98	73.66
PGSC0003DMT400071932	Potato	cytosol	13.49	69.37
KRH47127	Soybean	nucleus	30.65	34.52
KRH44155	Soybean	cytosol	30.12	33.92
KRH48684	Soybean	cytosol, endoplasmic reticulum	27.32	32.77
KRG97325	Soybean	endoplasmic reticulum	32.75	31.64
KRH38030	Soybean	endoplasmic reticulum	33.8	31.59
KRH71800	Soybean	plastid	33.63	31.42
KRH31589	Soybean	nucleus	32.92	31.13
KRH58901	Soybean	nucleus	33.45	31.11
KRH42811	Soybean	endoplasmic reticulum	33.45	30.86
KRH20283	Soybean	plastid	31.52	30.72
KRH03709	Soybean	plastid	31.52	29.51
KRH03228	Soybean	nucleus	31.0	29.4
KRH39630	Soybean	nucleus	26.97	28.68
KRH74291	Soybean	nucleus	26.97	28.68
KRH57127	Soybean	endoplasmic reticulum, nucleus	30.65	28.59
KRH68534	Soybean	cytosol	29.07	28.28
KRG94409	Soybean	cytosol	28.9	28.06
KRG96540	Soybean	cytosol, mitochondrion	34.68	25.78
KRH51212	Soybean	nucleus	31.0	25.25
KRH01937	Soybean	nucleus	31.0	25.07
KRH68277	Soybean	nucleus	34.15	24.94
KRH56577	Soybean	nucleus	29.25	21.55
KRG93254	Soybean	endoplasmic reticulum	29.07	21.39
Os02t0150000-00	Rice	mitochondrion	6.13	20.23
KRH27757	Soybean	nucleus	32.22	16.62
KRH77709	Soybean	nucleus	32.05	16.58
KRH36905	Soybean	nucleus	29.6	14.51
KRH11875	Soybean	endoplasmic reticulum	29.42	13.99

Protein Annotations

EntrezGene:100787545	Gene3D:3.40.50.300	MapMan:35.1	EMBL:ACUP02010845	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom
EnsemblPlantsGene:GLYMA_18G051700	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	UniProt:K7MQ23	EnsemblPlants:KRG98124	ProteinID:KRG98124	ProteinID:KRG98124.1
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF556	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487
SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000295FB3C	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr18:-:4461392..4471147

Molecular Weight (calculated)

62275.1 Da

IEP (calculated)

6.992

GRAVY (calculated)

-0.317

Length

571 amino acids

Sequence
(BLAST)

001: MSYVPPHLRN ATSTSVATAR TPSVTLDNNN NNHHHHHKLA FPSNTTTTTN CSPSLSFHNN ASRRSSAAPP SPRILATPDA VFPQWQPSER VSRMTPEQIE
101: EIRSRLNLDV AVASDSPPAP APAPIESFTD MCLHPSIMKD IAYHEYTRPT SIQAQAMPIA LSGRDLLGCA ETGSGKTAAF TIPMIQHCLA QPPIRRNDGP
201: LALVLAPTRE LAQQIEKEVK AFSRSLESLK TAIVVGGTNI EKQRFELRAG VEIAVATPGR FIDHLQQGNT SLSRISFVVL DEADRMLDMG FEPQIREVMR
301: NLPEKHQTLL FSATMPVEIE ELSKEYLANP VQVKVGKVSS PTTNVSQTLV KISENEKIDR LLDLLVEEAS QAEKCGHPFP LTIVFVERKT RCDEVAEALV
401: AQGLSAVSLH GGRSQSEREA ALHDFRSGTT NILVATDVAS RGLDVTGVSH VINLDLPKTM EDYVHRIGRT GRAGSTGLAT SFYTDRDMFL MANIRKAIAD
501: AESGNTLTFA TGKVARRKEK EAAAAQKEAN IALSKQLGLG AASMNIEDKY KFMITATNTK REGAADSAWD D

Best Arabidopsis Sequence Match ( AT1G55150.1 )
(BLAST)

001: MSRYDSRTGD STSYRDRRSD SGFGGTSSYG SSGSHTSSKK DNDGNESPRK LDLDGLTPFE KNFYVESPAV AAMTDTEVEE YRKLREITVE GKDIPKPVKS
101: FRDVGFPDYV LEEVKKAGFT EPTPIQSQGW PMAMKGRDLI GIAETGSGKT LSYLLPAIVH VNAQPMLAHG DGPIVLVLAP TRELAVQIQQ EASKFGSSSK
201: IKTTCIYGGV PKGPQVRDLQ KGVEIVIATP GRLIDMMESN NTNLRRVTYL VLDEADRMLD MGFDPQIRKI VSHIRPDRQT LYWSATWPKE VEQLSKKFLY
301: NPYKVIIGSS DLKANRAIRQ IVDVISESQK YNKLVKLLED IMDGSRILVF LDTKKGCDQI TRQLRMDGWP ALSIHGDKSQ AERDWVLSEF RSGKSPIMTA
401: TDVAARGLDV KDVKYVINYD FPGSLEDYVH RIGRTGRAGA KGTAYTFFTV ANARFAKELT NILQEAGQKV SPELASMGRS TAPPPPGLGG FRDRGSRRGW
501: S

Arabidopsis Description

DEA(D/H)-box RNA helicase family protein [Source:TAIR;Acc:AT1G55150]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.