CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH39630	Soybean	nucleus	95.53	95.53
Os07t0301200-01	Rice	cytosol	67.97	71.29
EER96257	Sorghum	cytosol	65.92	69.14
Zm00001d019449_P004	Maize	nucleus	65.18	68.9
TraesCS5D01G125100.1	Wheat	nucleus	67.41	67.79
TraesCS5B01G120500.1	Wheat	nucleus	66.85	67.61
CDY65864	Canola	nucleus	67.23	67.6
HORVU5Hr1G037290.3	Barley	nucleus	66.67	67.55
TraesCS5A01G114400.1	Wheat	nucleus	67.04	67.29
CDY66221	Canola	nucleus	66.67	66.79
Bra023227.1-P	Field mustard	nucleus	67.04	66.3
AT1G31970.1	Thale cress	cytosol	66.29	66.29
CDY41747	Canola	nucleus	65.74	65.37
VIT_02s0109g00380.t01	Wine grape	cytosol	76.35	65.29
PGSC0003DMT400024026	Potato	nucleus	67.6	65.17
Solyc08g076200.2.1	Tomato	nucleus	67.04	65.1
Bra035518.1-P	Field mustard	nucleus	64.62	64.74
GSMUA_Achr11P...	Banana	nucleus	69.09	64.3
CDX84112	Canola	nucleus	29.98	53.67
KRH47127	Soybean	nucleus	37.24	39.45
KRH44155	Soybean	cytosol	37.06	39.25
KRH48684	Soybean	cytosol, endoplasmic reticulum	32.96	37.18
KRH03228	Soybean	nucleus	36.69	32.72
KRH57127	Soybean	endoplasmic reticulum, nucleus	36.87	32.35
KRG97325	Soybean	endoplasmic reticulum	32.03	29.1
KRH31589	Soybean	nucleus	32.03	28.48
KRH38030	Soybean	endoplasmic reticulum	31.66	27.82
KRH20283	Soybean	plastid	30.35	27.82
KRH58901	Soybean	nucleus	31.66	27.69
KRH71800	Soybean	plastid	31.47	27.66
KRH42811	Soybean	endoplasmic reticulum	31.66	27.46
KRH30661	Soybean	endoplasmic reticulum	28.86	27.43
KRG98124	Soybean	endoplasmic reticulum	28.68	26.97
KRH03709	Soybean	plastid	29.98	26.39
KRH68534	Soybean	cytosol	27.56	25.21
KRG94409	Soybean	cytosol	27.56	25.17
KRH51212	Soybean	nucleus	32.22	24.68
KRH01937	Soybean	nucleus	31.84	24.22
KRG93254	Soybean	endoplasmic reticulum	34.82	24.1
KRH56577	Soybean	nucleus	34.08	23.61
KRG96540	Soybean	cytosol, mitochondrion	32.59	22.79
KRH68277	Soybean	nucleus	32.59	22.38
KRH36905	Soybean	nucleus	34.82	16.05
KRH77709	Soybean	nucleus	32.77	15.94
KRH11875	Soybean	endoplasmic reticulum	35.57	15.9
KRH27757	Soybean	nucleus	32.59	15.81

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EMBL:ACUP02000012	InterPro:DEAD/DEAH_box_helicase_dom	EnsemblPlantsGene:GLYMA_01G010400	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501
GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	UniProt:I1J4L9	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	EnsemblPlants:KRH74291	ProteinID:KRH74291	ProteinID:KRH74291.1	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF215	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
UniParc:UPI0001CA94E1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:1009200..1013846

Molecular Weight (calculated)

58900.5 Da

IEP (calculated)

8.657

GRAVY (calculated)

-0.513

Length

537 amino acids

Sequence
(BLAST)

001: MGRKHDAVLA SEPVAEEAPC SPELDSEKKK KKKKKNKNKD KHQTESSPKR KLDEHDPQNG TESKKKKKKH HESKGNAEET NGDSNNNNGD GANREETATD
101: GSVVVTGNNA GEAKYAAVKS FADSGLPENV LECCKGFEKP SPIQSRAWPF LLDGRDLIGI AATGSGKTLA FGIPAVMHVL GKRKGKSSKG RNPLGLVLSP
201: TRELAQQISD VMCDAGRSCG VQSICLYGGT SKGPQISSLK SGIDIVIGTP GRIQDLIEMG ICCLKEVSFV VLDEADRMLD MGFEQIVRSI LGQTCSDRQM
301: VMFSATWPLP VHYLAQEFMD PNPVKVVVGS EDLAANHDVM QIVEVLDDRS RDKRLVALLE KYHKSQRNRV LVFVLYKLEA KRVENMLQEG GWKVVSIHGD
401: KAQHDRTKAL SLFKNASCPL MIATDVAARG LDIPDVEVVI NYSFPLTTED YVHRIGRTGR AGKKGVAHTF FMQQNKGLAG ELVNVLREAG QIVPDALLKF
501: GTHVKKKESK LYGAHFKEIP VDAPKSQKKT FDDSDED

Best Arabidopsis Sequence Match ( AT1G31970.1 )
(BLAST)

001: MAGQKQELPV SGEPLAVESP MTNKKKKKSK KNKHTEENHE VEEVPQEVTN GVEEELSNKE KKKKRKREEK ESEKNKKKDV PEKKLEAEDL GEGESEQQKV
101: VVTGKGVEEA KYAALKTFAE SNLPENVLDC CKTFEKPSPI QSHTWPFLLD GRDLIGIAKT GSGKTLAFGI PAIMHVLKKN KKIGGGSKKV NPTCLVLSPT
201: RELAVQISDV LREAGEPCGL KSICVYGGSS KGPQISAIRS GVDIVIGTPG RLRDLIESNV LRLSDVSFVV LDEADRMLDM GFEEPVRFIL SNTNKVRQMV
301: MFSATWPLDV HKLAQEFMDP NPIKVIIGSV DLAANHDVMQ IIEVLDERAR DQRLIALLEK YHKSQKNRVL VFALYKVEAE RLERFLQQRG WKAVSIHGNK
401: AQSERTRSLS LFKEGSCPLL VATDVAARGL DIPDVEVVIN YTFPLTTEDY VHRIGRTGRA GKKGVAHTFF TPLNKGLAGE LVNVLREAGQ VVPADLLKFG
501: THVKKKESKL YGAHFKEIAA DAPKATKITF DNSDDED

Arabidopsis Description

RH5STRS1 [Source:UniProtKB/TrEMBL;Acc:A0A178W5E1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.