Factsheet for Solyc08g076200.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400024026	Potato	nucleus	98.01	97.31
Zm00001d019449_P004	Maize	nucleus	62.93	68.5
Os07t0301200-01	Rice	cytosol	62.93	67.97
EER96257	Sorghum	cytosol	62.93	67.97
KRH74291	Soybean	nucleus	65.1	67.04
KRH39630	Soybean	nucleus	64.56	66.48
HORVU5Hr1G037290.3	Barley	nucleus	62.57	65.28
CDY65864	Canola	nucleus	62.93	65.17
TraesCS5D01G125100.1	Wheat	nucleus	62.75	64.98
TraesCS5A01G114400.1	Wheat	nucleus	62.75	64.86
Bra023227.1-P	Field mustard	nucleus	63.47	64.64
TraesCS5B01G120500.1	Wheat	nucleus	62.03	64.6
CDY66221	Canola	nucleus	62.21	64.18
AT1G31970.1	Thale cress	cytosol	61.84	63.69
CDY41747	Canola	nucleus	61.48	62.96
Bra035518.1-P	Field mustard	nucleus	60.76	62.69
GSMUA_Achr11P...	Banana	nucleus	64.38	61.7
VIT_02s0109g00380.t01	Wine grape	cytosol	66.73	58.76
CDX84112	Canola	nucleus	26.94	49.67
Solyc12g044860.1.1	Tomato	nucleus	33.45	38.62
Solyc03g112350.2.1	Tomato	nucleus	35.08	29.8
Solyc12g035130.1.1	Tomato	nucleus	32.91	29.74
Solyc01g005960.2.1	Tomato	plastid	31.28	28.64
Solyc03g052980.2.1	Tomato	nucleus	31.46	28.43
Solyc09g015930.2.1	Tomato	plastid	27.12	26.88
Solyc06g068280.2.1	Tomato	extracellular, nucleus	28.75	26.72
Solyc03g117440.2.1	Tomato	cytosol, nucleus	28.39	26.39
Solyc02g086660.2.1	Tomato	nucleus	33.63	26.35
Solyc02g068190.1.1	Tomato	cytosol, nucleus	29.29	24.47
Solyc01g079330.2.1	Tomato	nucleus	32.55	23.26
Solyc02g081290.2.1	Tomato	nucleus	26.22	22.21
Solyc12g098700.1.1	Tomato	nucleus	31.83	15.34
Solyc01g057760.2.1	Tomato	nucleus	32.73	14.82

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0005829
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:K4CMY7
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF215	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487
SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc08g076200.2	EnsemblPlants:Solyc08g076200.2.1	UniParc:UPI000276BCC6	SEG:seg

Description

DEAD-box ATP-dependent RNA helicase 5 [Source:Projected from Arabidopsis thaliana (AT1G31970) UniProtKB/Swiss-Prot;Acc:Q9C551]

Coordinates

chr8:-:60216924..60225205

Molecular Weight (calculated)

61231.4 Da

IEP (calculated)

8.859

GRAVY (calculated)

-0.525

Length

553 amino acids

Sequence
(BLAST)

001: MVAKQLDDEP QTLNYESKSH KKQKRKLEDA EVEEVVVESK KEKKKKKKQK PKQEEDGSNG NTETLDGSNG NTEIFDGSAE LSEKKKSKKE KKSKVKEGNL
101: DDGSDVTVVN GKVKESSTNV VVTGKGANEL KYKALEKFVD AGLPSEVLEC CKNFEKPSPI QSHSWPFLLD GRDFIGIART GSGKTLAFGI PAIMHITTER
201: KSKKSKNPVC LVLSPTRELA QQISDVLCEA GKPTGVQSVC LYGGVDKHHQ KASLRSGVDI VIGTPGRLQD LMEMGACNLK EVSFVVLDEA DRMLDLGFEP
301: AVRAILSQTC SVRQMVMFSA TWPPEVHQLA QEFMDPNPIK VVVGSEDLAA NHDVMQIVEV LEDRARDERL QCLLEKYHKS RRNRVLVFVL YKKEASRVEI
401: MLQKRGWKVV SISGDKQQHA RTKALSLFKD GSCPLLIATD VAARGLDIPD VEVVINYSFP LTTEDYVHRI GRTGRAGKKG VAHTFFTKDN KGLSGELINV
501: LREAGQTVPA ALLNFGTHVK KKESKLYGAH FREIDANAPK ATKIKFGDSD NED

Best Arabidopsis Sequence Match ( AT1G31970.1 )
(BLAST)

001: MAGQKQELPV SGEPLAVESP MTNKKKKKSK KNKHTEENHE VEEVPQEVTN GVEEELSNKE KKKKRKREEK ESEKNKKKDV PEKKLEAEDL GEGESEQQKV
101: VVTGKGVEEA KYAALKTFAE SNLPENVLDC CKTFEKPSPI QSHTWPFLLD GRDLIGIAKT GSGKTLAFGI PAIMHVLKKN KKIGGGSKKV NPTCLVLSPT
201: RELAVQISDV LREAGEPCGL KSICVYGGSS KGPQISAIRS GVDIVIGTPG RLRDLIESNV LRLSDVSFVV LDEADRMLDM GFEEPVRFIL SNTNKVRQMV
301: MFSATWPLDV HKLAQEFMDP NPIKVIIGSV DLAANHDVMQ IIEVLDERAR DQRLIALLEK YHKSQKNRVL VFALYKVEAE RLERFLQQRG WKAVSIHGNK
401: AQSERTRSLS LFKEGSCPLL VATDVAARGL DIPDVEVVIN YTFPLTTEDY VHRIGRTGRA GKKGVAHTFF TPLNKGLAGE LVNVLREAGQ VVPADLLKFG
501: THVKKKESKL YGAHFKEIAA DAPKATKITF DNSDDED

Arabidopsis Description

RH5STRS1 [Source:UniProtKB/TrEMBL;Acc:A0A178W5E1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.