Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
25464976
nucleus: 28394025 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g035130.1.1 | Tomato | nucleus | 31.61 | 63.07 |
| VIT_05s0020g00470.t01 | Wine grape | cytosol | 55.86 | 59.15 |
| Solyc02g086660.2.1 | Tomato | nucleus | 32.51 | 56.23 |
| CDX74101 | Canola | cytosol | 39.64 | 55.25 |
| CDY08048 | Canola | nucleus | 39.39 | 54.66 |
| KRH36905 | Soybean | nucleus | 51.84 | 54.33 |
| KRH11875 | Soybean | endoplasmic reticulum | 52.74 | 53.62 |
| Bra001200.1-P | Field mustard | cytosol | 46.19 | 53.61 |
| AT3G06480.1 | Thale cress | cytosol | 47.42 | 53.22 |
| GSMUA_Achr1P15980_001 | Banana | cytosol | 42.75 | 49.43 |
| Solyc12g044860.1.1 | Tomato | nucleus | 18.92 | 48.23 |
| TraesCS3D01G100900.1 | Wheat | cytosol | 45.54 | 41.99 |
| Zm00001d007719_P010 | Maize | cytosol | 46.36 | 41.83 |
| TraesCS3A01G100200.1 | Wheat | cytosol | 45.45 | 41.6 |
| OQU84042 | Sorghum | cytosol | 47.17 | 41.5 |
| Zm00001d048632_P001 | Maize | cytosol | 46.93 | 41.46 |
| TraesCS3B01G117000.1 | Wheat | cytosol | 45.7 | 41.43 |
| HORVU3Hr1G018170.3 | Barley | cytosol | 45.21 | 39.94 |
| Solyc03g112350.2.1 | Tomato | nucleus | 20.48 | 38.4 |
| Solyc01g005960.2.1 | Tomato | plastid | 16.87 | 34.11 |
| Solyc03g052980.2.1 | Tomato | nucleus | 16.87 | 33.66 |
| Solyc08g076200.2.1 | Tomato | nucleus | 14.82 | 32.73 |
| Solyc09g015930.2.1 | Tomato | plastid | 14.09 | 30.82 |
| Solyc06g068280.2.1 | Tomato | extracellular, nucleus | 13.51 | 27.73 |
| Solyc03g117440.2.1 | Tomato | cytosol, nucleus | 13.27 | 27.23 |
| Solyc01g079330.2.1 | Tomato | nucleus | 17.12 | 27.0 |
| Solyc02g068190.1.1 | Tomato | cytosol, nucleus | 13.51 | 24.92 |
| Solyc02g081290.2.1 | Tomato | nucleus | 12.53 | 23.43 |
| Solyc12g098700.1.1 | Tomato | nucleus | 16.05 | 17.09 |
Protein Annotations
| Gene3D:2.20.70.10 | Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004004 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 | GO:GO:0005737 |
| GO:GO:0005773 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0010501 |
| GO:GO:0016787 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001202 | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:IPR014014 | UniProt:K4AVY7 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF00397 |
| ScanProsite:PS00039 | ScanProsite:PS01159 | PFscan:PS50020 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 |
| PANTHER:PTHR24031 | PANTHER:PTHR24031:SF255 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00456 | SMART:SM00487 |
| SMART:SM00490 | SUPFAM:SSF51045 | SUPFAM:SSF52540 | EnsemblPlantsGene:Solyc01g057760.2 | EnsemblPlants:Solyc01g057760.2.1 | UniParc:UPI0002761D28 |
| InterPro:WW_dom | InterPro:WW_dom_sf | SEG:seg | : | : | : |
Description
DEAD-box ATP-dependent RNA helicase 40 [Source:Projected from Arabidopsis thaliana (AT3G06480) UniProtKB/Swiss-Prot;Acc:Q9SQV1]
Coordinates
chr1:+:63614060..63622628
Molecular Weight (calculated)
135069.0 Da
IEP (calculated)
10.419
GRAVY (calculated)
-0.787
Length
1221 amino acids
Sequence
(BLAST)
(BLAST)
0001: MNQIIIRYEY FIKYVQQSKC VKKEHEEMTQ TSSLNDYAFN YLFFNTILFL KDLNPKLQIK RTILFRRHSA PGARRTQSFP EVNCLSSSMT TPEAATASLG
0101: PRYAPDDPNL PQPWKGLIDG STGLLYFWNP ETNVTQYERP SALPPPLPPG PPPEASAPKL APIPGASTVQ QYDSQGQQNQ QAFAQQGQMT HMSQHPQVAQ
0201: QVPHGSQGVS AGQQQGSPAG PAMQQVSFMP QLRSQMIQQP VHQMPSQMGQ TPNQPGPHVS QPAAQQMMPQ QLGSQAQAFP SVQMGQPHGY QFSHQQAQHV
0301: AYPHNLPPQG QLIPQQQNQH VPQNQQFSHQ QEHKVGFQQR EDVDFPQGKQ VRFSPQQVQQ TGASSAQNPQ VGTGSVIRPQ MSAQPSQALQ FGGSSVNVQQ
0401: PSSLGQWQQN TNDSGQRPPG PRFPGQMGSS TAHGHELDIP PVGSKGYEEN TPGRGGNDYY YNSNMDSRIR PPPQQPKLAA IPVARNQHEM RMGDPPLQNP
0501: VPTLPSGFNS MGGPPMQNIY GQAAGGPPFS NSSLMRPPGA LTGPPGSMHP SSVEVYLQKH EVTATGGDVP APFMTFEDTG FPPEILREIQ FAGFTSPTPI
0601: QAQTWPIALQ NRDIVAIAKT GSGKTLGYLI PAFVHLKRRR NNPQNGPTVV VLSPTRELAT QIQDEALKFG RSARVSCTCL YGGAPKVHQL KELERGTDIV
0701: VATPGRLNDI LEMKRIDFRQ VSLLVLDEAD RMLDMGFEPQ IRKIVNEIPP QRQTLMYTAT WPKEVRKIAG DLLRNPVQVN IGNVDQLAAN KSITQYIEVV
0801: PQMEKQRRLE QILRSQERGS KAIIFCSTKK LCDQLARSIG RNFGAAAIHG DKSQGERDWV LNQFRAGKTP ILVATDVAAR GLDIPDIRVV INYDFPTGIE
0901: DYVHRIGRTG RAGATGVSYT FLSDQDWKYA PDLVKVLEGA NQQVPPDVRE MALRAGGRDR GGMNRSDLVD GDGGRTRWDS GGRGGMRDGG WWVWWSWWDE
1001: RRESNFGGRG GRDGHFGGRV GMRDNNFGGR GGRGGAQSAW DRSDRYDSSD VRGRGRGRGR GRFDNRRDMP SRSRGRSYSP SPERVRTWGS RSRSRSRSRS
1101: RSYSRSYSRS RSRSYSPRRS RSRSRSLSRS RSRSRDRYQR RPRQSKFDQM DPDPGMSSIQ VAPPSVMPPL SIGAPVDGFS GAAPVDSKPN MEIAPESGMS
1201: PMSPGTRGNG LPGSEVIEQN H
0101: PRYAPDDPNL PQPWKGLIDG STGLLYFWNP ETNVTQYERP SALPPPLPPG PPPEASAPKL APIPGASTVQ QYDSQGQQNQ QAFAQQGQMT HMSQHPQVAQ
0201: QVPHGSQGVS AGQQQGSPAG PAMQQVSFMP QLRSQMIQQP VHQMPSQMGQ TPNQPGPHVS QPAAQQMMPQ QLGSQAQAFP SVQMGQPHGY QFSHQQAQHV
0301: AYPHNLPPQG QLIPQQQNQH VPQNQQFSHQ QEHKVGFQQR EDVDFPQGKQ VRFSPQQVQQ TGASSAQNPQ VGTGSVIRPQ MSAQPSQALQ FGGSSVNVQQ
0401: PSSLGQWQQN TNDSGQRPPG PRFPGQMGSS TAHGHELDIP PVGSKGYEEN TPGRGGNDYY YNSNMDSRIR PPPQQPKLAA IPVARNQHEM RMGDPPLQNP
0501: VPTLPSGFNS MGGPPMQNIY GQAAGGPPFS NSSLMRPPGA LTGPPGSMHP SSVEVYLQKH EVTATGGDVP APFMTFEDTG FPPEILREIQ FAGFTSPTPI
0601: QAQTWPIALQ NRDIVAIAKT GSGKTLGYLI PAFVHLKRRR NNPQNGPTVV VLSPTRELAT QIQDEALKFG RSARVSCTCL YGGAPKVHQL KELERGTDIV
0701: VATPGRLNDI LEMKRIDFRQ VSLLVLDEAD RMLDMGFEPQ IRKIVNEIPP QRQTLMYTAT WPKEVRKIAG DLLRNPVQVN IGNVDQLAAN KSITQYIEVV
0801: PQMEKQRRLE QILRSQERGS KAIIFCSTKK LCDQLARSIG RNFGAAAIHG DKSQGERDWV LNQFRAGKTP ILVATDVAAR GLDIPDIRVV INYDFPTGIE
0901: DYVHRIGRTG RAGATGVSYT FLSDQDWKYA PDLVKVLEGA NQQVPPDVRE MALRAGGRDR GGMNRSDLVD GDGGRTRWDS GGRGGMRDGG WWVWWSWWDE
1001: RRESNFGGRG GRDGHFGGRV GMRDNNFGGR GGRGGAQSAW DRSDRYDSSD VRGRGRGRGR GRFDNRRDMP SRSRGRSYSP SPERVRTWGS RSRSRSRSRS
1101: RSYSRSYSRS RSRSYSPRRS RSRSRSLSRS RSRSRDRYQR RPRQSKFDQM DPDPGMSSIQ VAPPSVMPPL SIGAPVDGFS GAAPVDSKPN MEIAPESGMS
1201: PMSPGTRGNG LPGSEVIEQN H
0001: MATTEDTPAS AGPRYAPEDP TLPQPWKGLI DGSTGILYYW NPETNVTQYE RPSAPPPHSA TTPKLAQIPV PSSGQGHQAQ HEQAKPVGHV SQQHGFQQQP
0101: QQFPSQHVRP QMMQQHPAQQ MPQQSGQQFP QQQSQSMVPH PHGHPSVQTY QPTTQQQQQG MQNQHSQMPQ QLSHQYAHSQ QHYMGFRPHM QTQGLQNSHQ
0201: TPQGGPHGQQ FPSQQEYNSL APKREGDEFH GGKKTGFSQP HLPNSERSPS QNTHFEANAA SQKTNANLAM AQKCNGPQAN AAVTQFQQPG ANLIHQQLGP
0301: RAPNQMDQTM LHQKSHVSPF QSNNTYENNL QSRPGNDSYV NMRMEVPVRG AQPLHPAAMP KDIRISGGPP TNADPAMGQT GHGTYGHAGP AFPNKSLVRP
0401: HFVTSPDVPH LSPVEIYRKQ HEVTTTGENI PAPYITFESS GLPPEILREL LSAGFPSPTP IQAQTWPIAL QSRDIVAIAK TGSGKTLGYL IPAFILLRHC
0501: RNDSRNGPTV LILAPTRELA TQIQDEALRF GRSSRISCTC LYGGAPKGPQ LKELERGADI VVATPGRLND ILEMKMIDFQ QVSLLVLDEA DRMLDMGFEP
0601: QIRKIVNEIP PRRQTLMYTA TWPKEVRKIA SDLLVNPVQV NIGRVDELAA NKAITQYVEV VPQMEKERRL EQILRSQERG SKVIIFCSTK RLCDHLARSV
0701: GRHFGAVVIH GDKTQGERDW VLNQFRSGKS CVLIATDVAA RGLDIKDIRV VINYDFPTGV EDYVHRIGRT GRAGATGVAF TFFTEQDWKY APDLIKVLEG
0801: ANQQVPPQVR DIAMRGGGGG GPGYSQDRRG MVNRFDSGGG GTRWDSGGGF GGRGGGFSGR EGGFGGREGG FGGREGGFGG RGGRFGMRDD SFGRGGNRGR
0901: GFTGPDAGHM NVGGRGGFGR FGNNNNMESR GFGRGSGRGF GRGVGRFDNR RGRSRSRSPD LVRPRRRSSS YSRSRSRSGS YSRSRSRSRS WSRSRSRSPR
1001: HSRDRGGHNR SRSYSRSPSP VYERRDRAPR VSGFDIKPPV ESVVNLDMNA AAAIENVVPT SLSERQGNGV VESEVEAALV RPVVDEEP
0101: QQFPSQHVRP QMMQQHPAQQ MPQQSGQQFP QQQSQSMVPH PHGHPSVQTY QPTTQQQQQG MQNQHSQMPQ QLSHQYAHSQ QHYMGFRPHM QTQGLQNSHQ
0201: TPQGGPHGQQ FPSQQEYNSL APKREGDEFH GGKKTGFSQP HLPNSERSPS QNTHFEANAA SQKTNANLAM AQKCNGPQAN AAVTQFQQPG ANLIHQQLGP
0301: RAPNQMDQTM LHQKSHVSPF QSNNTYENNL QSRPGNDSYV NMRMEVPVRG AQPLHPAAMP KDIRISGGPP TNADPAMGQT GHGTYGHAGP AFPNKSLVRP
0401: HFVTSPDVPH LSPVEIYRKQ HEVTTTGENI PAPYITFESS GLPPEILREL LSAGFPSPTP IQAQTWPIAL QSRDIVAIAK TGSGKTLGYL IPAFILLRHC
0501: RNDSRNGPTV LILAPTRELA TQIQDEALRF GRSSRISCTC LYGGAPKGPQ LKELERGADI VVATPGRLND ILEMKMIDFQ QVSLLVLDEA DRMLDMGFEP
0601: QIRKIVNEIP PRRQTLMYTA TWPKEVRKIA SDLLVNPVQV NIGRVDELAA NKAITQYVEV VPQMEKERRL EQILRSQERG SKVIIFCSTK RLCDHLARSV
0701: GRHFGAVVIH GDKTQGERDW VLNQFRSGKS CVLIATDVAA RGLDIKDIRV VINYDFPTGV EDYVHRIGRT GRAGATGVAF TFFTEQDWKY APDLIKVLEG
0801: ANQQVPPQVR DIAMRGGGGG GPGYSQDRRG MVNRFDSGGG GTRWDSGGGF GGRGGGFSGR EGGFGGREGG FGGREGGFGG RGGRFGMRDD SFGRGGNRGR
0901: GFTGPDAGHM NVGGRGGFGR FGNNNNMESR GFGRGSGRGF GRGVGRFDNR RGRSRSRSPD LVRPRRRSSS YSRSRSRSGS YSRSRSRSRS WSRSRSRSPR
1001: HSRDRGGHNR SRSYSRSPSP VYERRDRAPR VSGFDIKPPV ESVVNLDMNA AAAIENVVPT SLSERQGNGV VESEVEAALV RPVVDEEP
Arabidopsis Description
RH40DEAD-box ATP-dependent RNA helicase 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9SQV1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.