Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G100900.1 | Wheat | cytosol | 91.75 | 95.77 |
| TraesCS3A01G100200.1 | Wheat | cytosol | 92.19 | 95.5 |
| TraesCS3B01G117000.1 | Wheat | cytosol | 91.82 | 94.21 |
| OQU84042 | Sorghum | cytosol | 71.49 | 71.18 |
| Zm00001d007719_P010 | Maize | cytosol | 68.81 | 70.29 |
| Zm00001d048632_P001 | Maize | cytosol | 69.61 | 69.61 |
| CDX74101 | Canola | cytosol | 32.13 | 50.68 |
| HORVU3Hr1G024610.13 | Barley | cytosol, plastid | 25.9 | 50.64 |
| CDY08048 | Canola | nucleus | 31.98 | 50.23 |
| KRH36905 | Soybean | nucleus | 42.33 | 50.21 |
| VIT_05s0020g00470.t01 | Wine grape | cytosol | 41.68 | 49.96 |
| Bra001200.1-P | Field mustard | cytosol | 37.55 | 49.33 |
| GSMUA_Achr1P15980_001 | Banana | cytosol | 37.48 | 49.05 |
| KRH11875 | Soybean | endoplasmic reticulum | 42.62 | 49.04 |
| AT3G06480.1 | Thale cress | cytosol | 38.06 | 48.35 |
| Solyc01g057760.2.1 | Tomato | nucleus | 39.94 | 45.21 |
| HORVU3Hr1G092600.1 | Barley | cytosol | 18.38 | 44.25 |
| HORVU3Hr1G092610.1 | Barley | cytosol | 18.38 | 44.25 |
| HORVU3Hr1G018850.7 | Barley | cytosol | 16.5 | 41.68 |
| HORVU1Hr1G083090.1 | Barley | cytosol | 7.02 | 38.65 |
| HORVU4Hr1G031280.1 | Barley | cytosol, plastid | 15.2 | 34.94 |
| HORVU5Hr1G037290.3 | Barley | nucleus | 13.39 | 34.91 |
| HORVU7Hr1G084210.1 | Barley | cytosol | 15.34 | 34.75 |
| HORVU3Hr1G031710.1 | Barley | mitochondrion | 6.51 | 34.48 |
| HORVU5Hr1G109340.2 | Barley | plastid | 15.77 | 32.93 |
| HORVU5Hr1G048040.1 | Barley | plastid | 11.72 | 28.32 |
| HORVU1Hr1G091050.3 | Barley | nucleus | 11.87 | 27.42 |
| HORVU3Hr1G022710.1 | Barley | mitochondrion | 12.37 | 26.8 |
| HORVU4Hr1G053550.2 | Barley | mitochondrion | 14.83 | 25.82 |
| HORVU5Hr1G044620.1 | Barley | cytosol, mitochondrion | 6.51 | 23.68 |
| HORVU4Hr1G007110.17 | Barley | mitochondrion | 13.1 | 23.51 |
| HORVU6Hr1G080730.2 | Barley | cytosol | 5.35 | 22.63 |
| HORVU2Hr1G025790.1 | Barley | nucleus | 14.54 | 19.73 |
| HORVU0Hr1G020490.1 | Barley | nucleus | 14.76 | 19.14 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | UniProt:A0A287KAZ1 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | EnsemblPlantsGene:HORVU3Hr1G018170 | EnsemblPlants:HORVU3Hr1G018170.3 | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR001202 | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | InterPro:P-loop_NTPase |
| PFAM:PF00270 | PFAM:PF00271 | ScanProsite:PS00039 | ScanProsite:PS01159 | PFscan:PS50020 | PFscan:PS51192 |
| PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF255 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif |
| SMART:SM00456 | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF51045 | SUPFAM:SSF52540 | UniParc:UPI000B488F88 |
| InterPro:WW_dom | InterPro:WW_dom_sf | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chrchr3H:-:47268982..47277424
Molecular Weight (calculated)
148568.0 Da
IEP (calculated)
10.172
GRAVY (calculated)
-0.835
Length
1382 amino acids
Sequence
(BLAST)
(BLAST)
0001: WPAVSAPSAT QSSGRCVRRL DPPLAMAGAE AAADASGPRF APDDPTLPAP WKALIDGETL YYWNPETNLT QYDKPGAAAP PLPAPAPTSV PGAFAQPGMQ
0101: QQQQQQTQQQ QTQQQQPQQT AQQPQFQYQG QQAQQPPFQY QQQQQQEQMP NQQGSQQPLA HQYPNAHQQP MPYQHGHYMP PQQQYSYQVG QQPQMPQTQY
0201: NQGQQMPIPQ AANQGQQPTM PPGAYNQGQQ PTMPPGAYNQ GQRPPMPQAA YSHGQRPPMP QSAYNQGQQP QMPHASYNQG QQLQGTRMPQ TQVQHTQQSP
0301: GFHQPAQASQ GVQVSQPQVP QMSPRQGQLQ HGFQFTPQQG KQSHHGHLVT QYGQQNTTVK VDAGTHHEGK QTGFSLPLSQ QHGQVPPSNQ TLPSSHQRPE
0401: AHNQLNIHGV GGPPYPAKHH LGGSSPGETN NVSFLSAPAQ THQGGVDTNY RQQLASSHVV PNHIAPSPGR PPMGFKRGNS EDQFEKNEPL SSGRFDGINA
0501: LHQQPKHAAL PPSQNHLQDM RNGPPYSQPD NFGGYNMAPP HSVPNPLNNG PFPIGALTRP PSGTFSPPDF PSVASVDAYR QHHEVTAVGE NVPPPFMTFE
0601: ATGFPPEILS EVHAAGFLNP TPIQAQTWPV ALQSRDIVAI AKTGSGKTLG YLIPAFVHLR RCQNNPMSGP TVLVLAPTRE LASQIQDEAI KFGRASRVSC
0701: TCLYGGAPKG PQLRELERGA DIVVATPGRL NDILEMRKIS LHQISLLVLD EADRMLDMGF EPQIRKIVDE IPRNRQTLMY TATWPKEVTK IAGDLLRNPV
0801: QINIGSIDEL VANKSITQCV EMVPPMDKQR RLEQILRAEE RGSKIIIFCS TKKMCDQLAR SIGRSFGAAS IHGDKSQGER DHILGQFRTG IVPVLVATDV
0901: AARGLDIKDI RVVINYDFPT GIEDYVHRIG RTGRAGATGV AYTFFSEQDW KYAADLVKVL DGTGQHVPPE LQQMAARGAS GAPRNQAGGM SRWDGPGGGS
1001: RFESAVGGPG GFGGIREGPG GFGGRDGPGG FVDRDGPGRF GDRDGPGRFG DRDGPGRFGG REAPDGFGGR DGPGGFDGRM GPGPGGFGGR EGPGGFGGRE
1101: GPGPSGFSGR GGRGSDGFGR RGGASPGRFG GRGARGDSPG FGGRGRGDSF GFGGRGRGDF SSGRGGRGRG FGGRGRSDRG PHDRFISDGR GRYDGRRGLD
1201: KGRGRSYSRS PDRSRSRGYD RRSDSRSLSS RSRSRSRSWS RSRSHSRSWS RSRSRSRSRS RSHDQGPVER RPRVRSGFDV LPPATEAGAA VTGPLPVPLP
1301: GSVSDVAAPK PRQSLVDASD MSPMSPGGLV QAQEGAPFMG GNNANISSRQ ADQPSQGTDL VIPPSFSAAA NFPGPVVQQD AP
0101: QQQQQQTQQQ QTQQQQPQQT AQQPQFQYQG QQAQQPPFQY QQQQQQEQMP NQQGSQQPLA HQYPNAHQQP MPYQHGHYMP PQQQYSYQVG QQPQMPQTQY
0201: NQGQQMPIPQ AANQGQQPTM PPGAYNQGQQ PTMPPGAYNQ GQRPPMPQAA YSHGQRPPMP QSAYNQGQQP QMPHASYNQG QQLQGTRMPQ TQVQHTQQSP
0301: GFHQPAQASQ GVQVSQPQVP QMSPRQGQLQ HGFQFTPQQG KQSHHGHLVT QYGQQNTTVK VDAGTHHEGK QTGFSLPLSQ QHGQVPPSNQ TLPSSHQRPE
0401: AHNQLNIHGV GGPPYPAKHH LGGSSPGETN NVSFLSAPAQ THQGGVDTNY RQQLASSHVV PNHIAPSPGR PPMGFKRGNS EDQFEKNEPL SSGRFDGINA
0501: LHQQPKHAAL PPSQNHLQDM RNGPPYSQPD NFGGYNMAPP HSVPNPLNNG PFPIGALTRP PSGTFSPPDF PSVASVDAYR QHHEVTAVGE NVPPPFMTFE
0601: ATGFPPEILS EVHAAGFLNP TPIQAQTWPV ALQSRDIVAI AKTGSGKTLG YLIPAFVHLR RCQNNPMSGP TVLVLAPTRE LASQIQDEAI KFGRASRVSC
0701: TCLYGGAPKG PQLRELERGA DIVVATPGRL NDILEMRKIS LHQISLLVLD EADRMLDMGF EPQIRKIVDE IPRNRQTLMY TATWPKEVTK IAGDLLRNPV
0801: QINIGSIDEL VANKSITQCV EMVPPMDKQR RLEQILRAEE RGSKIIIFCS TKKMCDQLAR SIGRSFGAAS IHGDKSQGER DHILGQFRTG IVPVLVATDV
0901: AARGLDIKDI RVVINYDFPT GIEDYVHRIG RTGRAGATGV AYTFFSEQDW KYAADLVKVL DGTGQHVPPE LQQMAARGAS GAPRNQAGGM SRWDGPGGGS
1001: RFESAVGGPG GFGGIREGPG GFGGRDGPGG FVDRDGPGRF GDRDGPGRFG DRDGPGRFGG REAPDGFGGR DGPGGFDGRM GPGPGGFGGR EGPGGFGGRE
1101: GPGPSGFSGR GGRGSDGFGR RGGASPGRFG GRGARGDSPG FGGRGRGDSF GFGGRGRGDF SSGRGGRGRG FGGRGRSDRG PHDRFISDGR GRYDGRRGLD
1201: KGRGRSYSRS PDRSRSRGYD RRSDSRSLSS RSRSRSRSWS RSRSHSRSWS RSRSRSRSRS RSHDQGPVER RPRVRSGFDV LPPATEAGAA VTGPLPVPLP
1301: GSVSDVAAPK PRQSLVDASD MSPMSPGGLV QAQEGAPFMG GNNANISSRQ ADQPSQGTDL VIPPSFSAAA NFPGPVVQQD AP
0001: MATTEDTPAS AGPRYAPEDP TLPQPWKGLI DGSTGILYYW NPETNVTQYE RPSAPPPHSA TTPKLAQIPV PSSGQGHQAQ HEQAKPVGHV SQQHGFQQQP
0101: QQFPSQHVRP QMMQQHPAQQ MPQQSGQQFP QQQSQSMVPH PHGHPSVQTY QPTTQQQQQG MQNQHSQMPQ QLSHQYAHSQ QHYMGFRPHM QTQGLQNSHQ
0201: TPQGGPHGQQ FPSQQEYNSL APKREGDEFH GGKKTGFSQP HLPNSERSPS QNTHFEANAA SQKTNANLAM AQKCNGPQAN AAVTQFQQPG ANLIHQQLGP
0301: RAPNQMDQTM LHQKSHVSPF QSNNTYENNL QSRPGNDSYV NMRMEVPVRG AQPLHPAAMP KDIRISGGPP TNADPAMGQT GHGTYGHAGP AFPNKSLVRP
0401: HFVTSPDVPH LSPVEIYRKQ HEVTTTGENI PAPYITFESS GLPPEILREL LSAGFPSPTP IQAQTWPIAL QSRDIVAIAK TGSGKTLGYL IPAFILLRHC
0501: RNDSRNGPTV LILAPTRELA TQIQDEALRF GRSSRISCTC LYGGAPKGPQ LKELERGADI VVATPGRLND ILEMKMIDFQ QVSLLVLDEA DRMLDMGFEP
0601: QIRKIVNEIP PRRQTLMYTA TWPKEVRKIA SDLLVNPVQV NIGRVDELAA NKAITQYVEV VPQMEKERRL EQILRSQERG SKVIIFCSTK RLCDHLARSV
0701: GRHFGAVVIH GDKTQGERDW VLNQFRSGKS CVLIATDVAA RGLDIKDIRV VINYDFPTGV EDYVHRIGRT GRAGATGVAF TFFTEQDWKY APDLIKVLEG
0801: ANQQVPPQVR DIAMRGGGGG GPGYSQDRRG MVNRFDSGGG GTRWDSGGGF GGRGGGFSGR EGGFGGREGG FGGREGGFGG RGGRFGMRDD SFGRGGNRGR
0901: GFTGPDAGHM NVGGRGGFGR FGNNNNMESR GFGRGSGRGF GRGVGRFDNR RGRSRSRSPD LVRPRRRSSS YSRSRSRSGS YSRSRSRSRS WSRSRSRSPR
1001: HSRDRGGHNR SRSYSRSPSP VYERRDRAPR VSGFDIKPPV ESVVNLDMNA AAAIENVVPT SLSERQGNGV VESEVEAALV RPVVDEEP
0101: QQFPSQHVRP QMMQQHPAQQ MPQQSGQQFP QQQSQSMVPH PHGHPSVQTY QPTTQQQQQG MQNQHSQMPQ QLSHQYAHSQ QHYMGFRPHM QTQGLQNSHQ
0201: TPQGGPHGQQ FPSQQEYNSL APKREGDEFH GGKKTGFSQP HLPNSERSPS QNTHFEANAA SQKTNANLAM AQKCNGPQAN AAVTQFQQPG ANLIHQQLGP
0301: RAPNQMDQTM LHQKSHVSPF QSNNTYENNL QSRPGNDSYV NMRMEVPVRG AQPLHPAAMP KDIRISGGPP TNADPAMGQT GHGTYGHAGP AFPNKSLVRP
0401: HFVTSPDVPH LSPVEIYRKQ HEVTTTGENI PAPYITFESS GLPPEILREL LSAGFPSPTP IQAQTWPIAL QSRDIVAIAK TGSGKTLGYL IPAFILLRHC
0501: RNDSRNGPTV LILAPTRELA TQIQDEALRF GRSSRISCTC LYGGAPKGPQ LKELERGADI VVATPGRLND ILEMKMIDFQ QVSLLVLDEA DRMLDMGFEP
0601: QIRKIVNEIP PRRQTLMYTA TWPKEVRKIA SDLLVNPVQV NIGRVDELAA NKAITQYVEV VPQMEKERRL EQILRSQERG SKVIIFCSTK RLCDHLARSV
0701: GRHFGAVVIH GDKTQGERDW VLNQFRSGKS CVLIATDVAA RGLDIKDIRV VINYDFPTGV EDYVHRIGRT GRAGATGVAF TFFTEQDWKY APDLIKVLEG
0801: ANQQVPPQVR DIAMRGGGGG GPGYSQDRRG MVNRFDSGGG GTRWDSGGGF GGRGGGFSGR EGGFGGREGG FGGREGGFGG RGGRFGMRDD SFGRGGNRGR
0901: GFTGPDAGHM NVGGRGGFGR FGNNNNMESR GFGRGSGRGF GRGVGRFDNR RGRSRSRSPD LVRPRRRSSS YSRSRSRSGS YSRSRSRSRS WSRSRSRSPR
1001: HSRDRGGHNR SRSYSRSPSP VYERRDRAPR VSGFDIKPPV ESVVNLDMNA AAAIENVVPT SLSERQGNGV VESEVEAALV RPVVDEEP
Arabidopsis Description
RH40DEAD-box ATP-dependent RNA helicase 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9SQV1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.