Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G100900.1 | Wheat | cytosol | 98.13 | 98.87 |
| TraesCS3B01G117000.1 | Wheat | cytosol | 97.08 | 96.14 |
| HORVU3Hr1G018170.3 | Barley | cytosol | 95.5 | 92.19 |
| OQU84042 | Sorghum | cytosol | 74.21 | 71.33 |
| Zm00001d007719_P010 | Maize | cytosol | 71.36 | 70.36 |
| Zm00001d048632_P001 | Maize | cytosol | 72.26 | 69.75 |
| TraesCS3A01G130200.4 | Wheat | cytosol | 26.91 | 55.23 |
| CDX74101 | Canola | cytosol | 33.73 | 51.37 |
| CDY08048 | Canola | nucleus | 33.66 | 51.02 |
| VIT_05s0020g00470.t01 | Wine grape | cytosol | 43.85 | 50.74 |
| KRH36905 | Soybean | nucleus | 44.23 | 50.64 |
| Bra001200.1-P | Field mustard | cytosol | 39.36 | 49.9 |
| KRH11875 | Soybean | endoplasmic reticulum | 44.45 | 49.38 |
| GSMUA_Achr1P15980_001 | Banana | cytosol | 39.06 | 49.34 |
| AT3G06480.1 | Thale cress | cytosol | 39.81 | 48.81 |
| TraesCS3A01G194200.1 | Wheat | nucleus | 28.41 | 48.4 |
| TraesCS3A01G103700.1 | Wheat | cytosol | 17.69 | 47.58 |
| Solyc01g057760.2.1 | Tomato | nucleus | 41.6 | 45.45 |
| TraesCS3A01G416900.1 | Wheat | cytosol | 19.04 | 44.25 |
| TraesCS5A01G114400.1 | Wheat | nucleus | 13.79 | 34.39 |
| TraesCS5A01G454600.1 | Wheat | golgi | 16.34 | 34.28 |
| TraesCS7A01G374000.1 | Wheat | nucleus | 17.17 | 32.39 |
| TraesCS4A01G141400.1 | Wheat | plastid | 15.59 | 31.71 |
| TraesCS5A01G153700.1 | Wheat | cytosol | 12.44 | 28.47 |
| TraesCS1A01G415500.1 | Wheat | cytosol | 12.82 | 26.55 |
| TraesCS4A01G121700.1 | Wheat | mitochondrion | 15.07 | 26.21 |
| TraesCS3A01G122100.1 | Wheat | mitochondrion, plastid | 12.74 | 25.84 |
| TraesCS4A01G270200.1 | Wheat | nucleus | 13.34 | 24.48 |
| TraesCS7A01G298800.3 | Wheat | nucleus | 15.44 | 19.22 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005773 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001202 | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | ScanProsite:PS00039 |
| ScanProsite:PS01159 | PFscan:PS50020 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 |
| PANTHER:PTHR24031:SF255 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00456 | SMART:SM00487 | SMART:SM00490 |
| SUPFAM:SSF51045 | SUPFAM:SSF52540 | EnsemblPlantsGene:TraesCS3A01G100200 | EnsemblPlants:TraesCS3A01G100200.1 | InterPro:WW_dom | InterPro:WW_dom_sf |
| TIGR:cd00079 | TIGR:cd00268 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr3A:-:64788196..64794388
Molecular Weight (calculated)
143367.0 Da
IEP (calculated)
10.022
GRAVY (calculated)
-0.824
Length
1334 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAGAEAAADS SGPRFAPDDP TLPAPWKALI DGETLYYWNP ETNLTQYDKP GAAAPPLPAA APTPAPGAFA QPGMQQQQPP QQQQQQPQQT AQQPPFQYQG
0101: QQAQQPPFQY QGQFQYQQQQ EQMPNQQGSQ QPVAPQYPNA HQQPMPYQHG HYMQPQQQYS YQVGQQPQMS QTQYNQGQQM PIPQAANQGQ QPTMPPGAYN
0201: QGQRPPMPQA AYSHGQRPPM PQSAYNQGQQ PQMPHASYNQ GQQLQGTRMP QTQVQHTQQS PGFHQPAQAS QGLQASQPQV PQMSPQQGQL QHGFQFTPQQ
0301: GKQPHHGHLV SQHGQQNTTV KVDAGAHHEG KQTGFSLPLS QQHGQVPLSN QTLPSSHQRP EAHNQLNIHG VGGPPYPAKH HLGGSSPGET NNVSFLSAPA
0401: QTHQGGVDTN YQQQLASSHV VPNHIAPSPG RPPIGFKRGN SEDQFEKNEA LSSGRFDGIN ALHQQPKPAA LPPPQNHLQD MRNGPPYSQP DNFGGYNMAP
0501: PHLVQNPLNN GPFPIGALAR PPSGTFSPPD FPSVASVDAY RQHHEVTAVG ENVPPPFMTF EATGFPPEIL SEVHAAGFLN PTPIQAQTWP VALQSRDIVA
0601: IAKTGSGKTL GYLIPAFVHL RRCQNNPMSG PTVLVLAPTR ELASQIQDEA IKFGRSSRVS CTCLYGGAPK GPQLRELERG ADIVVATPGR LNDILEMRKI
0701: SLHQISLLVL DEADRMLDMG FEPQIRKIVD EIPRNRQTLM YTATWPKEVT KIAGDLLRNP VQINIGSIDE LVANKSITQY VEMVPPMDKQ RRLEQILRAE
0801: ERGSKIIIFC STKKMCDQLA RSIGRSFGAA SIHGDKSQGE RDHILGQFRT GIVPVLVATD VAARGLDIKD IRVVINYDFP TGIEDYVHRI GRTGRAGATG
0901: VAYTFFSEQD WKYAADLVKV LDGTGQQVPP ELQQMAARGA SGAPRNQAGG MSRWDSPGGG SRFESAVGGP GCYGGIREGP GGFGGRDGPG GFIDRDGPGR
1001: FGDRDGPGRF GGRETPDGFG GRDGPGGFDG RMGPGPGGFG GREGPGGFGG REGPGPSGFS GRGGRGSDGF GRRGGASPGR FGGHGGRGDS PGFGGRGRGD
1101: SSGFGGRGRG DFSGGRGGRG RGFGGRGRSD RGPHDRFISD GRGRYDGRRG FDKGRGRSYS RSPDRSRSRG YDRRSDSRSL SSRSRSRSRS WSRSRSRSRS
1201: WSRSRSRSRS RSRSRDQGPV ERRPRVRSGF DVLPPATEAG AAVTGPLPVP LPGSVSDGTA PIPRQSLADA SDMSPMSPGG LVHVQEGAPF MGGNDANISS
1301: RQADQPSQAT DLAIPLSFSA TANFPGPAVQ QDAP
0101: QQAQQPPFQY QGQFQYQQQQ EQMPNQQGSQ QPVAPQYPNA HQQPMPYQHG HYMQPQQQYS YQVGQQPQMS QTQYNQGQQM PIPQAANQGQ QPTMPPGAYN
0201: QGQRPPMPQA AYSHGQRPPM PQSAYNQGQQ PQMPHASYNQ GQQLQGTRMP QTQVQHTQQS PGFHQPAQAS QGLQASQPQV PQMSPQQGQL QHGFQFTPQQ
0301: GKQPHHGHLV SQHGQQNTTV KVDAGAHHEG KQTGFSLPLS QQHGQVPLSN QTLPSSHQRP EAHNQLNIHG VGGPPYPAKH HLGGSSPGET NNVSFLSAPA
0401: QTHQGGVDTN YQQQLASSHV VPNHIAPSPG RPPIGFKRGN SEDQFEKNEA LSSGRFDGIN ALHQQPKPAA LPPPQNHLQD MRNGPPYSQP DNFGGYNMAP
0501: PHLVQNPLNN GPFPIGALAR PPSGTFSPPD FPSVASVDAY RQHHEVTAVG ENVPPPFMTF EATGFPPEIL SEVHAAGFLN PTPIQAQTWP VALQSRDIVA
0601: IAKTGSGKTL GYLIPAFVHL RRCQNNPMSG PTVLVLAPTR ELASQIQDEA IKFGRSSRVS CTCLYGGAPK GPQLRELERG ADIVVATPGR LNDILEMRKI
0701: SLHQISLLVL DEADRMLDMG FEPQIRKIVD EIPRNRQTLM YTATWPKEVT KIAGDLLRNP VQINIGSIDE LVANKSITQY VEMVPPMDKQ RRLEQILRAE
0801: ERGSKIIIFC STKKMCDQLA RSIGRSFGAA SIHGDKSQGE RDHILGQFRT GIVPVLVATD VAARGLDIKD IRVVINYDFP TGIEDYVHRI GRTGRAGATG
0901: VAYTFFSEQD WKYAADLVKV LDGTGQQVPP ELQQMAARGA SGAPRNQAGG MSRWDSPGGG SRFESAVGGP GCYGGIREGP GGFGGRDGPG GFIDRDGPGR
1001: FGDRDGPGRF GGRETPDGFG GRDGPGGFDG RMGPGPGGFG GREGPGGFGG REGPGPSGFS GRGGRGSDGF GRRGGASPGR FGGHGGRGDS PGFGGRGRGD
1101: SSGFGGRGRG DFSGGRGGRG RGFGGRGRSD RGPHDRFISD GRGRYDGRRG FDKGRGRSYS RSPDRSRSRG YDRRSDSRSL SSRSRSRSRS WSRSRSRSRS
1201: WSRSRSRSRS RSRSRDQGPV ERRPRVRSGF DVLPPATEAG AAVTGPLPVP LPGSVSDGTA PIPRQSLADA SDMSPMSPGG LVHVQEGAPF MGGNDANISS
1301: RQADQPSQAT DLAIPLSFSA TANFPGPAVQ QDAP
0001: MATTEDTPAS AGPRYAPEDP TLPQPWKGLI DGSTGILYYW NPETNVTQYE RPSAPPPHSA TTPKLAQIPV PSSGQGHQAQ HEQAKPVGHV SQQHGFQQQP
0101: QQFPSQHVRP QMMQQHPAQQ MPQQSGQQFP QQQSQSMVPH PHGHPSVQTY QPTTQQQQQG MQNQHSQMPQ QLSHQYAHSQ QHYMGFRPHM QTQGLQNSHQ
0201: TPQGGPHGQQ FPSQQEYNSL APKREGDEFH GGKKTGFSQP HLPNSERSPS QNTHFEANAA SQKTNANLAM AQKCNGPQAN AAVTQFQQPG ANLIHQQLGP
0301: RAPNQMDQTM LHQKSHVSPF QSNNTYENNL QSRPGNDSYV NMRMEVPVRG AQPLHPAAMP KDIRISGGPP TNADPAMGQT GHGTYGHAGP AFPNKSLVRP
0401: HFVTSPDVPH LSPVEIYRKQ HEVTTTGENI PAPYITFESS GLPPEILREL LSAGFPSPTP IQAQTWPIAL QSRDIVAIAK TGSGKTLGYL IPAFILLRHC
0501: RNDSRNGPTV LILAPTRELA TQIQDEALRF GRSSRISCTC LYGGAPKGPQ LKELERGADI VVATPGRLND ILEMKMIDFQ QVSLLVLDEA DRMLDMGFEP
0601: QIRKIVNEIP PRRQTLMYTA TWPKEVRKIA SDLLVNPVQV NIGRVDELAA NKAITQYVEV VPQMEKERRL EQILRSQERG SKVIIFCSTK RLCDHLARSV
0701: GRHFGAVVIH GDKTQGERDW VLNQFRSGKS CVLIATDVAA RGLDIKDIRV VINYDFPTGV EDYVHRIGRT GRAGATGVAF TFFTEQDWKY APDLIKVLEG
0801: ANQQVPPQVR DIAMRGGGGG GPGYSQDRRG MVNRFDSGGG GTRWDSGGGF GGRGGGFSGR EGGFGGREGG FGGREGGFGG RGGRFGMRDD SFGRGGNRGR
0901: GFTGPDAGHM NVGGRGGFGR FGNNNNMESR GFGRGSGRGF GRGVGRFDNR RGRSRSRSPD LVRPRRRSSS YSRSRSRSGS YSRSRSRSRS WSRSRSRSPR
1001: HSRDRGGHNR SRSYSRSPSP VYERRDRAPR VSGFDIKPPV ESVVNLDMNA AAAIENVVPT SLSERQGNGV VESEVEAALV RPVVDEEP
0101: QQFPSQHVRP QMMQQHPAQQ MPQQSGQQFP QQQSQSMVPH PHGHPSVQTY QPTTQQQQQG MQNQHSQMPQ QLSHQYAHSQ QHYMGFRPHM QTQGLQNSHQ
0201: TPQGGPHGQQ FPSQQEYNSL APKREGDEFH GGKKTGFSQP HLPNSERSPS QNTHFEANAA SQKTNANLAM AQKCNGPQAN AAVTQFQQPG ANLIHQQLGP
0301: RAPNQMDQTM LHQKSHVSPF QSNNTYENNL QSRPGNDSYV NMRMEVPVRG AQPLHPAAMP KDIRISGGPP TNADPAMGQT GHGTYGHAGP AFPNKSLVRP
0401: HFVTSPDVPH LSPVEIYRKQ HEVTTTGENI PAPYITFESS GLPPEILREL LSAGFPSPTP IQAQTWPIAL QSRDIVAIAK TGSGKTLGYL IPAFILLRHC
0501: RNDSRNGPTV LILAPTRELA TQIQDEALRF GRSSRISCTC LYGGAPKGPQ LKELERGADI VVATPGRLND ILEMKMIDFQ QVSLLVLDEA DRMLDMGFEP
0601: QIRKIVNEIP PRRQTLMYTA TWPKEVRKIA SDLLVNPVQV NIGRVDELAA NKAITQYVEV VPQMEKERRL EQILRSQERG SKVIIFCSTK RLCDHLARSV
0701: GRHFGAVVIH GDKTQGERDW VLNQFRSGKS CVLIATDVAA RGLDIKDIRV VINYDFPTGV EDYVHRIGRT GRAGATGVAF TFFTEQDWKY APDLIKVLEG
0801: ANQQVPPQVR DIAMRGGGGG GPGYSQDRRG MVNRFDSGGG GTRWDSGGGF GGRGGGFSGR EGGFGGREGG FGGREGGFGG RGGRFGMRDD SFGRGGNRGR
0901: GFTGPDAGHM NVGGRGGFGR FGNNNNMESR GFGRGSGRGF GRGVGRFDNR RGRSRSRSPD LVRPRRRSSS YSRSRSRSGS YSRSRSRSRS WSRSRSRSPR
1001: HSRDRGGHNR SRSYSRSPSP VYERRDRAPR VSGFDIKPPV ESVVNLDMNA AAAIENVVPT SLSERQGNGV VESEVEAALV RPVVDEEP
Arabidopsis Description
RH40DEAD-box ATP-dependent RNA helicase 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9SQV1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.