Factsheet for TraesCS1A01G415500.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G445500.1	Wheat	cytosol	66.3	93.44
HORVU1Hr1G083090.1	Barley	cytosol	35.25	90.44
HORVU3Hr1G031710.1	Barley	mitochondrion	36.18	89.27
HORVU1Hr1G091050.3	Barley	nucleus	81.52	87.79
HORVU5Hr1G044620.1	Barley	cytosol, mitochondrion	41.77	70.79
CDX84672	Canola	cytosol	46.58	67.11
TraesCS4A01G270200.1	Wheat	nucleus	73.29	64.92
GSMUA_Achr3P01410_001	Banana	nucleus	51.55	63.0
CDY53786	Canola	nucleus	56.21	61.36
VIT_09s0054g01810.t01	Wine grape	cytosol	66.61	60.51
VIT_03s0038g00010.t01	Wine grape	cytosol	65.99	59.69
KRH51212	Soybean	nucleus	64.91	59.63
PGSC0003DMT400043101	Potato	nucleus	65.37	59.55
KRH01937	Soybean	nucleus	65.22	59.49
CDY37696	Canola	nucleus	54.19	59.15
Bra021872.1-P	Field mustard	nucleus	60.4	59.03
Solyc02g068190.1.1	Tomato	cytosol, nucleus	60.56	58.91
OQU83862	Sorghum	nucleus	58.7	58.88
Solyc02g081290.2.1	Tomato	nucleus	59.01	58.19
PGSC0003DMT400024330	Potato	cytosol	60.4	58.15
CDX79541	Canola	nucleus	56.52	57.87
AT2G33730.1	Thale cress	nucleus	64.75	56.89
TraesCS3A01G103700.1	Wheat	cytosol	27.02	35.08
TraesCS5A01G114400.1	Wheat	nucleus	25.16	30.28
TraesCS3A01G416900.1	Wheat	cytosol	26.09	29.27
TraesCS5A01G454600.1	Wheat	golgi	28.11	28.46
TraesCS5A01G153700.1	Wheat	cytosol	25.0	27.62
TraesCS4A01G141400.1	Wheat	plastid	27.48	26.98
TraesCS7A01G374000.1	Wheat	nucleus	28.73	26.17
TraesCS3A01G130200.4	Wheat	cytosol	25.93	25.69
TraesCS3A01G122100.1	Wheat	mitochondrion, plastid	24.84	24.32
TraesCS4A01G121700.1	Wheat	mitochondrion	27.95	23.47
TraesCS3A01G194200.1	Wheat	nucleus	25.62	21.07
TraesCS7A01G298800.3	Wheat	nucleus	28.73	17.26
TraesCS3A01G100200.1	Wheat	cytosol	26.55	12.82

Protein Annotations

MapMan:16.4.7.1.3	Gene3D:3.40.50.300	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF25	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS1A01G415500	EnsemblPlants:TraesCS1A01G415500.1	TIGR:cd00079
TIGR:cd00268	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1A:+:574392751..574394685

Molecular Weight (calculated)

72038.3 Da

IEP (calculated)

9.938

GRAVY (calculated)

-0.584

Length

644 amino acids

Sequence
(BLAST)

001: MKRTLDAAEP SPVFLSREKR QRLALERRQA AVADQRRSEL PTPPPPPHDP PFSCRHYPDR HRDRRGRDQD RDGREKDRAE RAREKELEAI REQYLGGSKD
101: KKPKTVAKPR DRFRFDWAST DDTSRVDAVN NQPPHGALLL YGRGFLAGID RREQKKAAAA ALHKDAAATY DALDMRVDRH WTDKRAEEMT ERDWRILRED
201: FGISYRGSRV PRPMRSWAES GLGAELLRNV DRAGYRKPTP IQMAAVPLGL QRRDVIGVAQ TGSGKTAAFV LPMLAYIARM PLPTSHSEAD EGPYALVLAP
301: TRELAQQIER ETVKLAACLG IRVVSIVGGK SDGQSTIQKQ ASMLERGCEV IVATPGRLLD CLESRYAVLN RCSYVVLDEA DRMIDMGFEP QVVGVLDAMP
401: SSHLKPENAD EELDEARTYR TTHMFSATMP PAVERLARKY LRNPVVVTVG SAGKAADLVT QNVVMVKVQE KMPRLKRILA DLGKDRTAIV FCNTKNSVEK
501: LTHDVENAGL CRVTALHGGK SQDERMASLD GFRKGRFNVL VATDLAARGI DVPEVAHVIN YEMPSSIDLY THRIGRTGRA GKKGLSTSFL TLEDTDIFFD
601: LRQMLVQSNS PVPPELARHE TSKFKPGSLP GRPPRRNGTV HAYH

Best Arabidopsis Sequence Match ( AT1G28180.1 )
(BLAST)

001: MAAIPLGLEQ RDVIGISATG SGKTAAFVLP MLAYISRLPP MREENQTEGP YALVMVPTRE LAHQIEEETV KFSRYLGFKA VSITGWESIE KQALKLSQGC
101: EIVIATPGRL LDCLERRYVV LNQCNYLVLD EADRMIDMDF EPQVSEVLDE KKIYRTTYMF SATMLLSVER LARKFLRNPV VVTIGETTKF ITQQVIMTKE
201: SDKFSRLKKL IDDLGDDKTA IVFVNTRNKV DYIVKNLEKV GRCRVTTLHA GKSQEQRDYS LEEFKKKRFN VLVTTDVLGR GLDILDLAQV INYDMPNTMD
301: LYTHRIGRTG RAGKTGVATT FLTLEDKDVF YGLKQKLNEC NSLVPPELAR HEASKFKPGT FPDRFSHF

Arabidopsis Description

P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:TAIR;Acc:AT1G28180]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.