Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G083090.1 | Barley | cytosol | 48.58 | 88.45 |
| HORVU3Hr1G031710.1 | Barley | mitochondrion | 49.67 | 86.97 |
| HORVU1Hr1G091050.3 | Barley | nucleus | 88.84 | 67.89 |
| TraesCS1A01G415500.1 | Wheat | cytosol | 93.44 | 66.3 |
| CDX84672 | Canola | cytosol | 63.02 | 64.43 |
| HORVU5Hr1G044620.1 | Barley | cytosol, mitochondrion | 50.33 | 60.53 |
| TraesCS6B01G364400.1 | Wheat | nucleus, plastid | 73.3 | 51.62 |
| TraesCS6B01G364300.1 | Wheat | nucleus, plastid | 73.3 | 51.62 |
| CDY53786 | Canola | nucleus | 65.65 | 50.85 |
| CDY37696 | Canola | nucleus | 65.43 | 50.68 |
| OQU83862 | Sorghum | nucleus | 66.3 | 47.2 |
| Bra021872.1-P | Field mustard | nucleus | 67.83 | 47.04 |
| Solyc02g068190.1.1 | Tomato | cytosol, nucleus | 67.18 | 46.37 |
| TraesCS4B01G043900.1 | Wheat | nucleus | 73.96 | 46.36 |
| TraesCS5B01G079300.1 | Wheat | nucleus | 71.12 | 45.2 |
| GSMUA_Achr3P01410_001 | Banana | nucleus | 52.08 | 45.16 |
| PGSC0003DMT400024330 | Potato | cytosol | 66.08 | 45.14 |
| VIT_09s0054g01810.t01 | Wine grape | cytosol | 70.02 | 45.13 |
| PGSC0003DMT400043101 | Potato | nucleus | 69.15 | 44.7 |
| VIT_03s0038g00010.t01 | Wine grape | cytosol | 69.58 | 44.66 |
| KRH51212 | Soybean | nucleus | 67.61 | 44.08 |
| CDX79541 | Canola | nucleus | 60.61 | 44.04 |
| KRH01937 | Soybean | nucleus | 67.61 | 43.77 |
| AT2G33730.1 | Thale cress | nucleus | 68.05 | 42.43 |
| Solyc02g081290.2.1 | Tomato | nucleus | 59.74 | 41.81 |
| TraesCS3B01G121100.1 | Wheat | cytosol | 36.32 | 34.02 |
| TraesCS5B01G120500.1 | Wheat | nucleus | 32.82 | 28.25 |
| TraesCS3B01G451900.1 | Wheat | cytosol | 35.45 | 28.22 |
| TraesCS4B01G126000.1 | Wheat | cytosol, plastid | 36.1 | 27.45 |
| TraesCS5B01G152200.1 | Wheat | cytosol | 35.23 | 26.44 |
| TraesCS3B01G141300.1 | Wheat | cytosol | 34.35 | 25.57 |
| TraesCS5B01G464500.2 | Wheat | cytosol | 35.23 | 25.39 |
| TraesCS3B01G149300.8 | Wheat | cytosol | 34.14 | 24.0 |
| TraesCS4B01G181800.1 | Wheat | nucleus | 35.01 | 20.89 |
| TraesCS3B01G208800.1 | Wheat | cytosol | 27.57 | 20.42 |
| TraesCS3B01G230800.1 | Wheat | nucleus | 33.48 | 19.49 |
| TraesCS3B01G193400.3 | Wheat | cytosol | 28.23 | 19.28 |
| TraesCS2B01G170700.1 | Wheat | nucleus | 34.35 | 15.44 |
| TraesCS7B01G187000.1 | Wheat | nucleus | 34.35 | 14.77 |
| TraesCS3B01G117000.1 | Wheat | cytosol | 35.01 | 11.88 |
Protein Annotations
| MapMan:16.4.7.1.3 | Gene3D:3.40.50.300 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 |
| PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF25 | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 |
| SUPFAM:SSF52540 | EnsemblPlantsGene:TraesCS1B01G445500 | EnsemblPlants:TraesCS1B01G445500.1 | TIGR:cd00079 | TIGR:cd00268 | : |
Description
No Description!
Coordinates
chr1B:+:665437939..665439312
Molecular Weight (calculated)
50525.1 Da
IEP (calculated)
8.797
GRAVY (calculated)
-0.252
Length
457 amino acids
Sequence
(BLAST)
(BLAST)
001: MRVDTHWTAK RAEKMTERDW RILREDFGIS YRGSRVPRPM RSWAESGLGA DLLRNVDRAG YRKPTPIQMA AVPLGLQRRD VIGVAQTGSG KTDAFVLPML
101: AYISRMPPPT SYGEADEGPY ALVLAPTREL AQQIERETVK LAACLGIRVV SIVGGKSDGQ STIQKQASML ERGCEVIVAT PGRLLDCLES RYAVLNRCSY
201: VVLDEVDRMI DMGFEPQVVG VLDAMPSSHL KPENADEELD EARTYRTTHM FSATMPPAVE RLARKYLRNP VVVTVGSAGK AADLVTQSVV MVKVQEKMPR
301: LKRILADLGK DRTAIVFCNT KNAVEKLAHD VENAGLCRVT AMHGGKSQDE RKASLDGFRN GRFDVLVATD LAARGIDVPE VAHVINYEMP SSIYLYTHRI
401: GRTGRAGKKG LSTSFLTLEN TDIFFDLKQM LAQSNSPVPP ELARHEASPC HQILFAQ
101: AYISRMPPPT SYGEADEGPY ALVLAPTREL AQQIERETVK LAACLGIRVV SIVGGKSDGQ STIQKQASML ERGCEVIVAT PGRLLDCLES RYAVLNRCSY
201: VVLDEVDRMI DMGFEPQVVG VLDAMPSSHL KPENADEELD EARTYRTTHM FSATMPPAVE RLARKYLRNP VVVTVGSAGK AADLVTQSVV MVKVQEKMPR
301: LKRILADLGK DRTAIVFCNT KNAVEKLAHD VENAGLCRVT AMHGGKSQDE RKASLDGFRN GRFDVLVATD LAARGIDVPE VAHVINYEMP SSIYLYTHRI
401: GRTGRAGKKG LSTSFLTLEN TDIFFDLKQM LAQSNSPVPP ELARHEASPC HQILFAQ
001: MAAIPLGLEQ RDVIGISATG SGKTAAFVLP MLAYISRLPP MREENQTEGP YALVMVPTRE LAHQIEEETV KFSRYLGFKA VSITGWESIE KQALKLSQGC
101: EIVIATPGRL LDCLERRYVV LNQCNYLVLD EADRMIDMDF EPQVSEVLDE KKIYRTTYMF SATMLLSVER LARKFLRNPV VVTIGETTKF ITQQVIMTKE
201: SDKFSRLKKL IDDLGDDKTA IVFVNTRNKV DYIVKNLEKV GRCRVTTLHA GKSQEQRDYS LEEFKKKRFN VLVTTDVLGR GLDILDLAQV INYDMPNTMD
301: LYTHRIGRTG RAGKTGVATT FLTLEDKDVF YGLKQKLNEC NSLVPPELAR HEASKFKPGT FPDRFSHF
101: EIVIATPGRL LDCLERRYVV LNQCNYLVLD EADRMIDMDF EPQVSEVLDE KKIYRTTYMF SATMLLSVER LARKFLRNPV VVTIGETTKF ITQQVIMTKE
201: SDKFSRLKKL IDDLGDDKTA IVFVNTRNKV DYIVKNLEKV GRCRVTTLHA GKSQEQRDYS LEEFKKKRFN VLVTTDVLGR GLDILDLAQV INYDMPNTMD
301: LYTHRIGRTG RAGKTGVATT FLTLEDKDVF YGLKQKLNEC NSLVPPELAR HEASKFKPGT FPDRFSHF
Arabidopsis Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:TAIR;Acc:AT1G28180]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.