Factsheet for TraesCS3B01G230800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G194200.1	Wheat	nucleus	97.71	97.96
TraesCS3D01G202500.3	Wheat	nucleus	96.82	93.94
Os01t0549400-01	Rice	nucleus	76.82	76.14
KXG32714	Sorghum	nucleus	76.18	75.6
Zm00001d044510_P002	Maize	mitochondrion	76.05	74.44
Zm00001d011155_P012	Maize	nucleus	72.1	72.29
Bra040699.1-P	Field mustard	cytosol	44.84	57.8
AT3G01540.2	Thale cress	cytosol	45.48	57.67
Bra001004.1-P	Field mustard	cytosol	46.62	57.55
PGSC0003DMT400080614	Potato	nucleus	44.84	57.42
Solyc12g035130.1.1	Tomato	nucleus	44.08	56.54
CDX91943	Canola	cytosol	45.73	53.98
Bra023478.1-P	Field mustard	cytosol	45.99	53.4
Solyc02g086660.2.1	Tomato	nucleus	48.03	53.4
CDY28671	Canola	cytosol	44.71	52.94
TraesCS3B01G149300.8	Wheat	cytosol	43.69	52.77
GSMUA_Achr8P31890_001	Banana	nucleus	52.61	52.54
CDX74304	Canola	cytosol	45.99	52.47
PGSC0003DMT400001391	Potato	cytosol	48.79	52.47
CDX91036	Canola	cytosol	45.48	52.19
KRG93254	Soybean	endoplasmic reticulum	50.96	51.55
KRH56577	Soybean	nucleus	50.83	51.48
AT5G14610.1	Thale cress	cytosol	45.61	50.28
CDX85591	Canola	cytosol	45.86	47.87
VIT_14s0066g01020.t01	Wine grape	cytosol	51.85	47.16
TraesCS3B01G121100.1	Wheat	cytosol	28.92	46.52
TraesCS3B01G451900.1	Wheat	cytosol	28.92	39.55
TraesCS1B01G445500.1	Wheat	cytosol	19.49	33.48
TraesCS5B01G120500.1	Wheat	nucleus	22.29	32.96
TraesCS4B01G126000.1	Wheat	cytosol, plastid	23.69	30.95
TraesCS5B01G464500.2	Wheat	cytosol	24.84	30.76
TraesCS3B01G117000.1	Wheat	cytosol	47.77	27.84
TraesCS3B01G141300.1	Wheat	cytosol	21.02	26.87
TraesCS6B01G364300.1	Wheat	nucleus, plastid	22.04	26.66
TraesCS6B01G364400.1	Wheat	nucleus, plastid	22.04	26.66
TraesCS5B01G152200.1	Wheat	cytosol	20.64	26.6
TraesCS4B01G043900.1	Wheat	nucleus	22.8	24.55
TraesCS4B01G181800.1	Wheat	nucleus	23.31	23.89
TraesCS5B01G079300.1	Wheat	nucleus	21.66	23.64
TraesCS3B01G208800.1	Wheat	cytosol	18.09	23.01
TraesCS3B01G193400.3	Wheat	cytosol	18.98	22.27
TraesCS7B01G187000.1	Wheat	nucleus	22.8	16.84
TraesCS2B01G170700.1	Wheat	nucleus	21.4	16.52

Protein Annotations

Gene3D:2.20.70.10	Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001202	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	ScanProsite:PS00039	ScanProsite:PS01159	PFscan:PS50020	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF358	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00456
SMART:SM00487	SMART:SM00490	SUPFAM:SSF51045	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS3B01G230800	EnsemblPlants:TraesCS3B01G230800.1
InterPro:WW_dom	InterPro:WW_dom_sf	TIGR:cd00079	TIGR:cd00201	TIGR:cd00268	SEG:seg

Description

No Description!

Coordinates

chr3B:+:348105075..348109435

Molecular Weight (calculated)

87426.2 Da

IEP (calculated)

10.591

GRAVY (calculated)

-1.004

Length

785 amino acids

Sequence
(BLAST)

001: MSGTAAPRYA PDDPTVPKPW RGLVDGTTGY LYYWNPDTNV TQYEKPVPPE AQLPPPPPLP PPPPRARGRD RRDRSRSRSR SRSRTPPRRE HRDRDRDRDR
101: RRHDEHDSFK PSSSHHHLPP AATIIPTAAA DDPSAEAYRR RHEITVIGDN VPAPITEFDS GVIPLDILKE IQRAGFPSPT PIQAQSWPIA LLNQDVVAIA
201: KTGSGKTLGE LATQILEEAV KFGRSSRISS TCLYGGAPKG PQLRDLERGV DVVVATPGRL NDILEMRKIS LKQVSYLVLD EADRMLDMGF EPQIRKIVRD
301: IPSGRQTLMY TATWPKEVRR IADELLVHPV QVTIGSVDEL VANKAITQHV EVVTPSEKLW RLEQILRSHD SGSKILIFCT TKRMCDQLSR TLNRQFGAAA
401: IHGDKSQNER EKVLSQFRSG RSPILVATDV AARGLDIKDI RVVINYDFPT GVEDYVHRIG RTGRAGATGL AYTFLCDQDS KYAADLIKIL EGADQDVPPE
501: LLDMVSRGGR GRKRNKWATR SERGGGSRPE LDSRYGGRLE GSRGGRGKDD YGGRSRNDHG GSRRSARGRS RSLSRSDSDR RSPSPKRRRH DVQSSRSRTR
601: SRSRSRSRSR SRSRNKSRNR SRSRSYTRNR RASRSRSRSP GARRRPERRA GSGSTRPDSA HPVEKKSSPN AHPSNDHRSR SVDPSNDYQA EDGKMGKVDL
701: DRSPSPQEQD DKSAPYSSVY NGEGGRGSMS PNGEPVVDAK PVEVSVSSKK REDEEEGMID EEGEEGMIAD DDPRASAAVQ NGGDK

Best Arabidopsis Sequence Match ( AT3G01540.1 )
(BLAST)

001: MAATAAASVV RYAPEDHTLP KPWKGLIDDR TGYLYFWNPE TNVTQYEKPT PSLPPKFSPA VSVSSSVQVQ QTDAYAPPKD DDKYSRGSER VSRFSEGGRS
101: GPPYSNGAAN GVGDSAYGAA STRVPLPSSA PASELSPEAY SRRHEITVSG GQVPPPLMSF EATGFPPELL REVLSAGFSA PTPIQAQSWP IAMQGRDIVA
201: IAKTGSGKTL GYLIPGFLHL QRIRNDSRMG PTILVLSPTR ELATQIQEEA VKFGRSSRIS CTCLYGGAPK GPQLRDLERG ADIVVATPGR LNDILEMRRI
301: SLRQISYLVL DEADRMLDMG FEPQIRKIVK EIPTKRQTLM YTATWPKGVR KIAADLLVNP AQVNIGNVDE LVANKSITQH IEVVAPMEKQ RRLEQILRSQ
401: EPGSKVIIFC STKRMCDQLT RNLTRQFGAA AIHGDKSQPE RDNVLNQFRS GRTPVLVATD VAARGLDVKD IRAVVNYDFP NGVEDYVHRI GRTGRAGATG
501: QAFTFFGDQD SKHASDLIKI LEGANQRVPP QIREMATRGG GGMNKFSRWG PPSGGRGRGG DSGYGGRGSF ASRDRSSNGW GRERERSRSP ERFNRAPPPS
601: STGSPPRSFH ETMMMKHR

Arabidopsis Description

RH14DEAD-box ATP-dependent RNA helicase 14 [Source:UniProtKB/Swiss-Prot;Acc:Q8H136]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.