CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044510_P002	Maize	mitochondrion	94.18	92.89
Zm00001d011155_P012	Maize	nucleus	90.01	90.93
Os01t0549400-01	Rice	nucleus	81.42	81.31
TraesCS3D01G202500.3	Wheat	nucleus	78.89	77.13
TraesCS3A01G194200.1	Wheat	nucleus	75.98	76.76
TraesCS3B01G230800.1	Wheat	nucleus	75.6	76.18
Bra040699.1-P	Field mustard	cytosol	48.8	63.38
AT3G01540.2	Thale cress	cytosol	49.3	63.0
Bra001004.1-P	Field mustard	cytosol	50.57	62.89
PGSC0003DMT400080614	Potato	nucleus	47.79	61.66
Solyc12g035130.1.1	Tomato	nucleus	47.53	61.44
CDX91943	Canola	cytosol	49.94	59.4
Bra023478.1-P	Field mustard	cytosol	50.7	59.32
CDY28671	Canola	cytosol	48.8	58.22
CDX91036	Canola	cytosol	50.19	58.04
GSMUA_Achr8P31890_001	Banana	nucleus	57.52	57.89
CDX74304	Canola	cytosol	50.19	57.7
Solyc02g086660.2.1	Tomato	nucleus	50.95	57.08
PGSC0003DMT400001391	Potato	cytosol	52.09	56.44
KRH56577	Soybean	nucleus	54.99	56.13
KRG93254	Soybean	endoplasmic reticulum	54.74	55.8
AT5G14610.1	Thale cress	cytosol	49.68	55.2
OQU86230	Sorghum	cytosol	49.56	54.83
CDX85591	Canola	cytosol	50.57	53.19
VIT_14s0066g01020.t01	Wine grape	cytosol	55.37	50.75
KXG31614	Sorghum	cytosol	31.1	50.0
EES04084	Sorghum	cytosol	30.47	41.7
OQU76674	Sorghum	cytosol	25.66	35.8
EER96257	Sorghum	cytosol	22.76	35.16
KXG37329	Sorghum	cytosol, plastid	26.04	32.44
KXG34634	Sorghum	plastid	26.42	32.35
KXG28851	Sorghum	cytosol, plastid	25.28	32.0
OQU84042	Sorghum	cytosol	51.45	29.32
EER92293	Sorghum	cytosol	20.86	26.7
OQU83862	Sorghum	nucleus	21.49	26.48
EER94974	Sorghum	cytosol, mitochondrion, nucleus, plastid	23.01	23.76
KXG37746	Sorghum	nucleus	23.89	23.39
OQU79814	Sorghum	nucleus	23.77	19.05
EES14596	Sorghum	nucleus	23.01	17.14

Protein Annotations

Gene3D:2.20.70.10	Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1B6Q477	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001202	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	EnsemblPlants:KXG32714	ProteinID:KXG32714	ProteinID:KXG32714.1	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFAM:PF00397	ScanProsite:PS00039	ScanProsite:PS01159	PFscan:PS50020
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF358	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00456	SMART:SM00487	SMART:SM00490	EnsemblPlantsGene:SORBI_3003G187400	SUPFAM:SSF51045
SUPFAM:SSF52540	UniParc:UPI0003C6B23E	InterPro:WW_dom	InterPro:WW_dom_sf	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:-:50623466..50628456

Molecular Weight (calculated)

87923.7 Da

IEP (calculated)

10.545

GRAVY (calculated)

-0.983

Length

791 amino acids

Sequence
(BLAST)

001: MSGGGGSSGR AAPRYAPDDP TLPKPWRGLV DGTTGYLYYW NPETNVTQYE RPTPPDNQLL PPPPPLPPPP PRSRDRRDRS RSRSRSRTPP RRDHRDRDRD
101: RDRRHDEHAS SKSASAHHHP APVAAAAADP STEAYRRRHE ITVTGDNVPA PITSFEAGGF PSEILKELQR AGFASPTPIQ AQSWPIAMQS QDVVAIAKTG
201: SGKTLGYLLP GFMHIKRLQN STRNGPTVLV LAPTRELATQ ILDEAVKFGR SSRISCTCLY GGAPKGPQLR DLDRGVDVVV ATPGRLNDIL EMRRVSLKQV
301: SYLVLDEADR MLDMGFEPQI RKIVKEMPHR RQTLMYTATW PKEVRRIADD LLVHPVQVTI GSVDELVANS AITQHVEVIT PSEKQRRLEQ ILRSQDSGSK
401: ILIFCTTKRM CDQLARTLTR QFGASAIHGD KSQSEREKVL NHFRSGRSPI LVATDVAARG LDIKDIRVVI NYDFPTGVED YVHRIGRTGR AGATGVAYTF
501: FCDQDSKYAA DLIKILEGAN QKVPRDLEDM ASRGGGRGRK RNRWASHSDR GGSRSELDSR SGRGSHGRDD YGSRGRYDSG ETDGRSRRSA RGRSRSRSRS
601: HSRSRSPSPK RSRRHEARRS RTKSRSRSRS RSYRNHRASR SKSRSPVASR RYEKTAAISG SARPNSGHAE HKSPPRSHSV DDHVNHSDHK DDHMEDGKME
701: RVDLDRSPSP QDDKSAPYSP VYNGKASGSM SPNVQPEADA KYVKPSGKPE PASPVRHSKG RDDDEEGIID EDGEIAEDDP RANAAVQNGN N

Best Arabidopsis Sequence Match ( AT3G01540.4 )
(BLAST)

001: MAATAAASVV RYAPEDHTLP KPWKGLIDDR TGYLYFWNPE TNVTQYEKPT PSLPPKFSPA VSVSSSVQVQ QTDAYAPPKD DDKYSRGSER VSRFSEGGRS
101: GPPYSNGAAN GVGDSAYGAA STRVPLPSSA PASELSPEAY SRRHEITVSG GQVPPPLMSF EATGFPPELL REVLSAGFSA PTPIQAQSWP IAMQGRDIVA
201: IAKTGSGKTL GYLIPGFLHL QRIRNDSRMG PTILVLSPTR ELATQIQEEA VKFGRSSRIS CTCLYGGAPK GPQLRDLERG ADIVVATPGR LNDILEMRRI
301: SLRQISYLVL DEADRMLDMG FEPQIRKIVK EIPTKRQTLM YTATWPKGVR KIAADLLVNP AQVNIGNVDE LVANKSITQH IEVVAPMEKQ RRLEQILRSQ
401: EPGSKVIIFC STKRMCDQLT RNLTRQFGAA AIHGDKSQPE RDNVLNQFRS GRTPVLVATD VAARGLDVKD IRAVVNYDFP NGVEDYVHRI GRTGRAGATG
501: QAFTFFGDQD SKHASDLIKI LEGANQRVPP QIREMATRGG GGMNKFSRWG PPSGGRGRGG DSGYGGRGSF ASRDSRSSNG WGRERERSRS PERFNRAPPP
601: SSTGSPPRSF HETMMMKHR

Arabidopsis Description

RH14DEAD-box ATP-dependent RNA helicase 14 [Source:UniProtKB/Swiss-Prot;Acc:Q8H136]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.