Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX91039 | Canola | cytosol | 25.44 | 99.43 |
| CDX91037 | Canola | cytosol | 25.44 | 99.43 |
| Bra023478.1-P | Field mustard | cytosol | 94.3 | 95.41 |
| CDX85591 | Canola | cytosol | 96.49 | 87.77 |
| AT5G14610.1 | Thale cress | cytosol | 83.04 | 79.78 |
| CDX91943 | Canola | cytosol | 70.18 | 72.18 |
| CDY28671 | Canola | cytosol | 69.3 | 71.49 |
| CDX74304 | Canola | cytosol | 70.03 | 69.62 |
| PGSC0003DMT400080614 | Potato | nucleus | 59.36 | 66.23 |
| Solyc12g035130.1.1 | Tomato | nucleus | 58.92 | 65.85 |
| Solyc02g086660.2.1 | Tomato | nucleus | 62.72 | 60.76 |
| KRG93254 | Soybean | endoplasmic reticulum | 68.13 | 60.05 |
| KRH56577 | Soybean | nucleus | 67.98 | 60.0 |
| PGSC0003DMT400001391 | Potato | cytosol | 63.01 | 59.04 |
| TraesCS3B01G149300.8 | Wheat | cytosol | 54.53 | 57.38 |
| TraesCS3A01G130200.4 | Wheat | cytosol | 54.39 | 57.23 |
| TraesCS3D01G131100.11 | Wheat | cytosol | 54.53 | 57.12 |
| Zm00001d008725_P003 | Maize | cytosol | 57.46 | 56.71 |
| Zm00001d039673_P002 | Maize | cytosol | 56.14 | 54.78 |
| OQU86230 | Sorghum | cytosol | 56.73 | 54.27 |
| HORVU3Hr1G024610.13 | Barley | cytosol, plastid | 54.97 | 53.18 |
| Os01t0172200-01 | Rice | cytosol | 58.63 | 52.83 |
| VIT_14s0066g01020.t01 | Wine grape | cytosol | 64.62 | 51.22 |
| Zm00001d011155_P012 | Maize | nucleus | 58.19 | 50.83 |
| KXG32714 | Sorghum | nucleus | 58.04 | 50.19 |
| GSMUA_Achr8P31890_001 | Banana | nucleus | 57.16 | 49.75 |
| Zm00001d044510_P002 | Maize | mitochondrion | 57.6 | 49.13 |
| Os01t0549400-01 | Rice | nucleus | 56.43 | 48.74 |
| TraesCS3D01G202500.3 | Wheat | nucleus | 54.97 | 46.48 |
| TraesCS3A01G194200.1 | Wheat | nucleus | 52.63 | 45.98 |
| TraesCS3B01G230800.1 | Wheat | nucleus | 52.19 | 45.48 |
| CDY10596 | Canola | nucleus | 32.46 | 44.49 |
| CDY02459 | Canola | cytosol | 32.31 | 44.29 |
| CDY47978 | Canola | plastid | 26.46 | 43.3 |
| CDY16735 | Canola | cytosol | 34.65 | 40.1 |
| CDY48128 | Canola | cytosol | 34.8 | 40.07 |
| CDX98304 | Canola | cytosol, plastid | 26.75 | 39.7 |
| CDX74101 | Canola | cytosol | 49.71 | 38.81 |
| CDY08048 | Canola | nucleus | 49.56 | 38.52 |
| CDX84672 | Canola | cytosol | 23.25 | 35.57 |
| CDY41747 | Canola | nucleus | 27.05 | 34.26 |
| CDX67749 | Canola | cytosol | 29.97 | 34.05 |
| CDX71948 | Canola | cytosol | 29.68 | 34.0 |
| CDY14843 | Canola | cytosol, plastid | 30.26 | 33.82 |
| CDX98301 | Canola | cytosol | 29.68 | 33.78 |
| CDY66221 | Canola | nucleus | 26.32 | 33.58 |
| CDY06034 | Canola | cytosol | 28.22 | 33.57 |
| CDY65864 | Canola | nucleus | 26.17 | 33.52 |
| CDY49232 | Canola | cytosol | 30.56 | 33.44 |
| CDX67752 | Canola | cytosol | 30.85 | 33.33 |
| CDX71944 | Canola | cytosol | 30.41 | 32.81 |
| CDX84112 | Canola | nucleus | 13.6 | 31.0 |
| CDX87315 | Canola | cytosol | 22.08 | 29.15 |
| CDY38671 | Canola | cytosol | 22.08 | 29.09 |
| CDY61276 | Canola | cytosol | 22.08 | 29.09 |
| CDX67949 | Canola | cytosol | 23.1 | 29.04 |
| CDY39973 | Canola | cytosol | 21.78 | 28.76 |
| CDX83333 | Canola | nucleus | 26.32 | 28.26 |
| CDY53786 | Canola | nucleus | 23.83 | 27.63 |
| CDY37696 | Canola | nucleus | 23.68 | 27.46 |
| CDX88990 | Canola | cytosol, plastid | 22.37 | 27.42 |
| CDY72529 | Canola | cytosol | 24.12 | 26.48 |
| CDX80096 | Canola | cytosol | 27.05 | 25.41 |
| CDY37796 | Canola | cytosol | 27.19 | 25.34 |
| CDX95719 | Canola | cytosol | 27.05 | 25.17 |
| CDX79541 | Canola | nucleus | 22.81 | 24.8 |
| CDX79384 | Canola | cytosol | 12.28 | 21.54 |
| CDY44720 | Canola | nucleus | 25.88 | 20.49 |
| CDY41597 | Canola | nucleus | 22.81 | 20.18 |
| CDY00570 | Canola | nucleus | 16.52 | 18.62 |
| CDY31513 | Canola | nucleus | 26.02 | 16.09 |
Protein Annotations
| Gene3D:2.20.70.10 | Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078DPA5 | EnsemblPlants:CDX91036 | ProteinID:CDX91036 |
| ProteinID:CDX91036.1 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005524 | EnsemblPlantsGene:GSBRNA2T00151802001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001202 |
| InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 |
| PFAM:PF00397 | ScanProsite:PS00039 | ScanProsite:PS01159 | PFscan:PS50020 | PFscan:PS51192 | PFscan:PS51194 |
| PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF255 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00456 |
| SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF51045 | SUPFAM:SSF52540 | UniParc:UPI0004EE5C89 | InterPro:WW_dom |
| InterPro:WW_dom_sf | SEG:seg | : | : | : | : |
Description
BnaC02g05610D
Coordinates
chrLK031865:-:460017..463398
Molecular Weight (calculated)
73116.3 Da
IEP (calculated)
9.868
GRAVY (calculated)
-0.557
Length
684 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAATATAST IRYAPEDPNL PKPWKGLVDS RTGYLYFWNP ETNVTQYERP PGLAPPKPSP APVSSSVQAQ QQPSSGFSSG KEEDKYDNDG PKTDSGSRFS
101: EASRSGPMNS SNAASGLGNA SSGAVVPPPS AAGIEKMSPE AYCRRHEITV TGGQVPPPLM SFEATGFPPE LLRESYSCMP RALSFVPQLY GAGFSAPSPI
201: QAQSWPVAMQ NRDIVAVAKT GSGKTLGYLI PGFMHLQRVR NDSRMGPTIL VLSPTRELAT QIQAEALKFG KSSRISCACL YGGAPKGPQL KEIERGVDIV
301: IATPGRLNDI LEMKRISLHQ VSYLVLDEAD RMLDMGFEPQ IRKIVNEVPT KRQTLMYTAT WPKEVRKIAS DLLSSPAQVN IGNVDELVAN KSITQTIEVI
401: PPMEKQRRLE QILRSQEPGS KIIIFCSTKR MCDTLARNLT RTFGANAIHG DKSQQERDDV LNQFRSGRTP VLVATDVAAR GLDVKDIRVV VNYDFPNGVE
501: DYVHRIGRTG RAGATGLAYT FFGDQDAKHA SDLIKILEGA SQKVPQEVRE LATRGGGMNK FRRWGTPSGG GGGYGDSGYG GRGGGRGDSG YGGRGGSGYG
601: GRGDSGYGGR GDSGYGGRGG SGYGGRGGGD AGGRGSWSDS GRGGSGWGRE RSRSPERFNR AAAAGPSTSS PPRSFHEAMM MRQK
101: EASRSGPMNS SNAASGLGNA SSGAVVPPPS AAGIEKMSPE AYCRRHEITV TGGQVPPPLM SFEATGFPPE LLRESYSCMP RALSFVPQLY GAGFSAPSPI
201: QAQSWPVAMQ NRDIVAVAKT GSGKTLGYLI PGFMHLQRVR NDSRMGPTIL VLSPTRELAT QIQAEALKFG KSSRISCACL YGGAPKGPQL KEIERGVDIV
301: IATPGRLNDI LEMKRISLHQ VSYLVLDEAD RMLDMGFEPQ IRKIVNEVPT KRQTLMYTAT WPKEVRKIAS DLLSSPAQVN IGNVDELVAN KSITQTIEVI
401: PPMEKQRRLE QILRSQEPGS KIIIFCSTKR MCDTLARNLT RTFGANAIHG DKSQQERDDV LNQFRSGRTP VLVATDVAAR GLDVKDIRVV VNYDFPNGVE
501: DYVHRIGRTG RAGATGLAYT FFGDQDAKHA SDLIKILEGA SQKVPQEVRE LATRGGGMNK FRRWGTPSGG GGGYGDSGYG GRGGGRGDSG YGGRGGSGYG
601: GRGDSGYGGR GDSGYGGRGG SGYGGRGGGD AGGRGSWSDS GRGGSGWGRE RSRSPERFNR AAAAGPSTSS PPRSFHEAMM MRQK
001: MAATASAIRY APEDPNLPKP WKGLVDSRTG YLYFWNPETN VTQYERPASS APPKLAAIPV SSSVQTNQQS SSGFNSGKED DKYGRGSDGP KSDSGSRFNE
101: AGRTGPISSN DAASGLGNAS SGGSSARGPP SSAAGNELSP EAYCRKHEIT VSGGQVPPPL MSFEATGLPN ELLREVYSAG FSAPSPIQAQ SWPIAMQNRD
201: IVAIAKTGSG KTLGYLIPGF MHLQRIHNDS RMGPTILVLS PTRELATQIQ VEALKFGKSS KISCACLYGG APKGPQLKEI ERGVDIVVAT PGRLNDILEM
301: KRISLHQVSY LVLDEADRML DMGFEPQIRK IVNEVPTKRQ TLMYTATWPK EVRKIAADLL VNPAQVNIGN VDELVANKSI TQTIEVLAPM EKHSRLEQIL
401: RSQEPGSKII IFCSTKRMCD QLARNLTRTF GAAAIHGDKS QAERDDVLNQ FRSGRTPVLV ATDVAARGLD VKDIRVVVNY DFPNGVEDYV HRIGRTGRAG
501: ATGLAYTFFG DQDAKHASDL IKILEGANQK VPPQVREMAT RGGGGMNKFR RWGTPSSGGG GGRGGYGDSG YGGRGESGYG SRGDSGYGGR GDSGGRGSWA
601: PSRDSSGSSG WGRERSRSPE RFRGGPPSTS SPPRSFHEAM MMKNR
101: AGRTGPISSN DAASGLGNAS SGGSSARGPP SSAAGNELSP EAYCRKHEIT VSGGQVPPPL MSFEATGLPN ELLREVYSAG FSAPSPIQAQ SWPIAMQNRD
201: IVAIAKTGSG KTLGYLIPGF MHLQRIHNDS RMGPTILVLS PTRELATQIQ VEALKFGKSS KISCACLYGG APKGPQLKEI ERGVDIVVAT PGRLNDILEM
301: KRISLHQVSY LVLDEADRML DMGFEPQIRK IVNEVPTKRQ TLMYTATWPK EVRKIAADLL VNPAQVNIGN VDELVANKSI TQTIEVLAPM EKHSRLEQIL
401: RSQEPGSKII IFCSTKRMCD QLARNLTRTF GAAAIHGDKS QAERDDVLNQ FRSGRTPVLV ATDVAARGLD VKDIRVVVNY DFPNGVEDYV HRIGRTGRAG
501: ATGLAYTFFG DQDAKHASDL IKILEGANQK VPPQVREMAT RGGGGMNKFR RWGTPSSGGG GGRGGYGDSG YGGRGESGYG SRGDSGYGGR GDSGGRGSWA
601: PSRDSSGSSG WGRERSRSPE RFRGGPPSTS SPPRSFHEAM MMKNR
Arabidopsis Description
DEAD box RNA helicase family protein [Source:UniProtKB/TrEMBL;Acc:F4K6V1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.