Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003568.1-P | Field mustard | cytosol | 86.15 | 56.85 |
| CDX67949 | Canola | cytosol | 78.46 | 56.25 |
| CDY38671 | Canola | cytosol | 73.59 | 55.3 |
| CDY39973 | Canola | cytosol | 72.56 | 54.63 |
| CDY61276 | Canola | cytosol | 72.31 | 54.34 |
| CDX87315 | Canola | cytosol | 72.05 | 54.25 |
| AT5G51280.1 | Thale cress | cytosol | 78.97 | 52.12 |
| VIT_09s0002g08120.t01 | Wine grape | cytosol | 74.87 | 49.74 |
| KRH68534 | Soybean | cytosol | 74.62 | 49.57 |
| KRG94409 | Soybean | cytosol | 74.62 | 49.49 |
| AT4G33370.1 | Thale cress | cytosol | 67.18 | 48.34 |
| PGSC0003DMT400036663 | Potato | cytosol | 72.56 | 48.05 |
| PGSC0003DMT400073340 | Potato | cytosol | 72.05 | 47.71 |
| Solyc03g117440.2.1 | Tomato | cytosol, nucleus | 72.56 | 47.56 |
| Solyc06g068280.2.1 | Tomato | extracellular, nucleus | 72.31 | 47.4 |
| TraesCS3B01G141300.1 | Wheat | cytosol | 67.44 | 42.83 |
| Os02t0150100-02 | Rice | cytosol | 50.0 | 42.39 |
| GSMUA_Achr2P09160_001 | Banana | cytosol | 57.95 | 41.32 |
| Zm00001d047502_P001 | Maize | extracellular | 65.13 | 41.1 |
| EER92293 | Sorghum | cytosol | 64.87 | 40.94 |
| HORVU3Hr1G022710.1 | Barley | mitochondrion | 66.92 | 40.91 |
| TraesCS5A01G153700.1 | Wheat | cytosol | 60.77 | 40.65 |
| HORVU5Hr1G048040.1 | Barley | plastid | 59.23 | 40.38 |
| TraesCS3A01G122100.1 | Wheat | mitochondrion, plastid | 67.69 | 40.12 |
| Os06t0697200-00 | Rice | cytosol | 63.08 | 39.74 |
| TraesCS5D01G159000.1 | Wheat | cytosol | 61.79 | 39.64 |
| TraesCS5B01G152200.1 | Wheat | cytosol | 61.03 | 39.08 |
| GSMUA_Achr1P13820_001 | Banana | mitochondrion | 46.92 | 33.76 |
| CDY10596 | Canola | nucleus | 23.33 | 18.24 |
| CDX84672 | Canola | cytosol | 20.77 | 18.12 |
| CDY02459 | Canola | cytosol | 23.08 | 18.04 |
| CDY47978 | Canola | plastid | 19.23 | 17.94 |
| CDX83333 | Canola | nucleus | 29.23 | 17.9 |
| CDY16735 | Canola | cytosol | 25.38 | 16.75 |
| CDY48128 | Canola | cytosol | 25.38 | 16.67 |
| CDX98304 | Canola | cytosol, plastid | 18.72 | 15.84 |
| CDX95719 | Canola | cytosol | 29.23 | 15.51 |
| CDY06034 | Canola | cytosol | 22.82 | 15.48 |
| CDX98301 | Canola | cytosol | 23.85 | 15.47 |
| CDY37796 | Canola | cytosol | 28.97 | 15.4 |
| CDY41747 | Canola | nucleus | 21.28 | 15.37 |
| CDY65864 | Canola | nucleus | 21.03 | 15.36 |
| CDY66221 | Canola | nucleus | 21.03 | 15.3 |
| CDX67749 | Canola | cytosol | 23.59 | 15.28 |
| CDX80096 | Canola | cytosol | 28.46 | 15.25 |
| CDY14843 | Canola | cytosol, plastid | 23.85 | 15.2 |
| CDY53786 | Canola | nucleus | 22.82 | 15.08 |
| CDX71948 | Canola | cytosol | 22.82 | 14.91 |
| CDY49232 | Canola | cytosol | 23.85 | 14.88 |
| CDX67752 | Canola | cytosol | 24.1 | 14.85 |
| CDY37696 | Canola | nucleus | 22.31 | 14.75 |
| CDX71944 | Canola | cytosol | 23.85 | 14.67 |
| CDX84112 | Canola | nucleus | 11.03 | 14.33 |
| CDX79541 | Canola | nucleus | 21.79 | 13.51 |
| CDY72529 | Canola | cytosol | 21.54 | 13.48 |
| CDY28671 | Canola | cytosol | 22.56 | 13.27 |
| CDX91943 | Canola | cytosol | 22.56 | 13.23 |
| CDX88990 | Canola | cytosol, plastid | 18.46 | 12.9 |
| CDX74304 | Canola | cytosol | 22.56 | 12.79 |
| CDX91036 | Canola | cytosol | 21.54 | 12.28 |
| CDX85591 | Canola | cytosol | 21.79 | 11.3 |
| CDY00570 | Canola | nucleus | 17.44 | 11.2 |
| CDY44720 | Canola | nucleus | 24.36 | 11.0 |
| CDY08048 | Canola | nucleus | 23.59 | 10.45 |
| CDX74101 | Canola | cytosol | 23.33 | 10.39 |
| CDY41597 | Canola | nucleus | 18.21 | 9.18 |
| CDY31513 | Canola | nucleus | 24.87 | 8.77 |
| CDX91037 | Canola | cytosol | 3.33 | 7.43 |
| CDX91039 | Canola | cytosol | 3.33 | 7.43 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078CTL7 | EnsemblPlants:CDX79384 | ProteinID:CDX79384 | ProteinID:CDX79384.1 |
| InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005524 |
| EnsemblPlantsGene:GSBRNA2T00132090001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 |
| InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 |
| PANTHER:PTHR24031 | PANTHER:PTHR24031:SF542 | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SUPFAM:SSF52540 | UniParc:UPI0004EF47E2 |
Description
BnaC06g19190D
Coordinates
chrLK031817:+:1777798..1779162
Molecular Weight (calculated)
44612.6 Da
IEP (calculated)
9.009
GRAVY (calculated)
-0.239
Length
390 amino acids
Sequence
(BLAST)
(BLAST)
001: MELDDDYVEY VPVAKLRAMQ KQKILQRKGK VSAFEKEKVT ESSKPSLLVQ ATQLKRDAPE VTATEHIILQ EKEMLDRLSD KKTLMSVREL AKGITYIEPM
101: TTGWEPLSYV RTMSRKQMDS IRKQWYVTVS GEEVPPPIKN FEDMMFDRPV LDMLKEKGIV QSTPIYRSRV FPWLFCGALV EAGYPPLRSL LCIGGVDMRS
201: QLDVVKRGVH IVAATPRKLK DLFAKKKMNL DACRYLTLNE ADRLVDLGFE DDIREVFDHF KSQRQTLLFS ATMPAKIQVF ARSALVKPVM VNVGRAGAVN
301: LDVILEVEYV KQEAKIVYLF ECLQKTSLPV LIFCENKADV DDVHEYLLLK GVEAVAIHGG KDQEDRKYAI SSFKAGEKTS WWRPTLLQRV
101: TTGWEPLSYV RTMSRKQMDS IRKQWYVTVS GEEVPPPIKN FEDMMFDRPV LDMLKEKGIV QSTPIYRSRV FPWLFCGALV EAGYPPLRSL LCIGGVDMRS
201: QLDVVKRGVH IVAATPRKLK DLFAKKKMNL DACRYLTLNE ADRLVDLGFE DDIREVFDHF KSQRQTLLFS ATMPAKIQVF ARSALVKPVM VNVGRAGAVN
301: LDVILEVEYV KQEAKIVYLF ECLQKTSLPV LIFCENKADV DDVHEYLLLK GVEAVAIHGG KDQEDRKYAI SSFKAGEKTS WWRPTLLQRV
001: MEVDDGYVEY VPVEERLAQM KRKVVEEPGK GMMEHLSDKK KLMSVGELAR GITYTEPLST WWKPPLHVRK MSTKQMDLIR KQWHITVNGE DIPPPIKNFM
101: DMKFPSPLLR MLKDKGIMHP TPIQVQGLPV VLSGRDMIGI AFTGSGKTLV FVLPMIILAL QEEIMMPIAA GEGPIALVIC PSRELAKQTY DVVEQFVASL
201: VEDGYPRLRS LLCIGGVDMR SQLDVVKKGV HIVVATPGRL KDILAKKKMS LDACRLLTLD EADRLVDLGF EDDIRHVFDH FKSQRQTLLF SATMPAKIQI
301: FATSALVKPV TVNVGRAGAA NLDVIQEVEY VKQEAKIVYL LECLQKTTPP VLIFCENKAD VDDIHEYLLL KGVEAVAIHG GKDQEDRDYA ISLFKAGKKD
401: VLVATDVASK GLDFPDIQHV INYDMPGEIE NYVHRIGRTG RCGKTGIATT FINKNQSEIT LLDLKHLLQE AKQRIPPVLA ELNGPMEETE TIANASGVKG
501: CAYCGGLGHR ILQCPKFEHQ KSVAISSSRK DHFGSDGYRG EV
101: DMKFPSPLLR MLKDKGIMHP TPIQVQGLPV VLSGRDMIGI AFTGSGKTLV FVLPMIILAL QEEIMMPIAA GEGPIALVIC PSRELAKQTY DVVEQFVASL
201: VEDGYPRLRS LLCIGGVDMR SQLDVVKKGV HIVVATPGRL KDILAKKKMS LDACRLLTLD EADRLVDLGF EDDIRHVFDH FKSQRQTLLF SATMPAKIQI
301: FATSALVKPV TVNVGRAGAA NLDVIQEVEY VKQEAKIVYL LECLQKTTPP VLIFCENKAD VDDIHEYLLL KGVEAVAIHG GKDQEDRDYA ISLFKAGKKD
401: VLVATDVASK GLDFPDIQHV INYDMPGEIE NYVHRIGRTG RCGKTGIATT FINKNQSEIT LLDLKHLLQE AKQRIPPVLA ELNGPMEETE TIANASGVKG
501: CAYCGGLGHR ILQCPKFEHQ KSVAISSSRK DHFGSDGYRG EV
Arabidopsis Description
RH43Putative DEAD-box ATP-dependent RNA helicase 43 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZB4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.