Factsheet for Os06t0697200-00

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0150100-02	Rice	cytosol	62.84	84.57
KRH68534	Soybean	cytosol	71.73	75.64
PGSC0003DMT400036663	Potato	cytosol	71.73	75.38
CDY39973	Canola	cytosol	63.0	75.29
KRG94409	Soybean	cytosol	71.41	75.17
CDX87315	Canola	cytosol	62.84	75.1
VIT_09s0002g08120.t01	Wine grape	cytosol	71.08	74.96
CDY61276	Canola	cytosol	62.84	74.95
PGSC0003DMT400073340	Potato	cytosol	71.24	74.87
GSMUA_Achr2P09160_001	Banana	cytosol	65.91	74.59
CDY38671	Canola	cytosol	62.52	74.57
Solyc03g117440.2.1	Tomato	cytosol, nucleus	71.24	74.12
Solyc06g068280.2.1	Tomato	extracellular, nucleus	71.24	74.12
Bra018133.1-P	Field mustard	cytosol	68.66	72.28
CDX67949	Canola	cytosol	63.17	71.88
Bra035177.1-P	Field mustard	cytosol	67.85	71.43
Bra008471.1-P	Field mustard	cytosol	64.78	71.23
AT5G51280.1	Thale cress	cytosol	67.69	70.9
AT4G33370.1	Thale cress	cytosol	61.87	70.66
Bra003568.1-P	Field mustard	cytosol	66.07	69.2
GSMUA_Achr1P13820_001	Banana	mitochondrion	57.03	65.13
CDX79384	Canola	cytosol	39.74	63.08
Os01t0197200-01	Rice	plasma membrane	28.11	35.22
Os06t0602400-01	Rice	nucleus, plasma membrane	24.56	31.41
Os07t0301200-01	Rice	cytosol	25.04	30.27
Os01t0911100-01	Rice	nucleus, plastid	21.65	28.09
Os11t0599500-00	Rice	nucleus, plasma membrane	28.11	27.93
Os03t0805200-01	Rice	plastid	27.63	26.84
Os07t0202100-01	Rice	nucleus	27.46	26.65
Os03t0308500-01	Rice	mitochondrion	33.12	26.62
Os08t0154225-00	Rice	cytosol	23.59	24.54
Os03t0708600-02	Rice	nucleus	27.95	23.51
Os01t0549400-01	Rice	nucleus	27.63	21.59
Os01t0172200-01	Rice	cytosol	25.36	20.69
Os02t0150000-00	Rice	mitochondrion	5.65	20.23
Os08t0159900-01	Rice	extracellular, nucleus	31.18	18.4
Os08t0154200-01	Rice	cytosol, nucleus	0.97	2.8
Os01t0911000-01	Rice	nucleus	0.0	0.0

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:4341945	ProteinID:BAD54454.1	ProteinID:BAF20374.2	ProteinID:BAS99296.1
InterPro:DEAD/DEAH_box_helicase_dom	ProteinID:EAZ38145.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	GO:GO:0046872
GO:GO:0071013	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
EnsemblPlantsGene:Os06g0697200	EnsemblPlants:Os06t0697200-00	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF542	UniProt:Q5Z6G5	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0000447038	RefSeq:XP_015641765.1	SEG:seg

Description

RNA helicase 35BDEAD-box protein abstrakt. (Os06t0697200-00)

Coordinates

chr6:+:29163800..29166676

Molecular Weight (calculated)

68147.7 Da

IEP (calculated)

7.042

GRAVY (calculated)

-0.247

Length

619 amino acids

Sequence
(BLAST)

001: MAAAAAAAAA GDSPRRGTPD SDEEDYEEYV PVAKRRAMEA ERLRRATKPP TTNAVAVAAP PPPPRSTSSP AVGEVAVKTS LLVKATKLKR EAPEVTPAER
101: LLQQEREMIE HLSDRKALMP VGEIAKGISY SEPITTGWRP PLRLRRMPRS RADALRRSWH ILVDGDDVPP PSRSFGDLRL PEPILRALRG KGIEKPTPIQ
201: VQGLPVALSG RDMIGIAFTG SGKTLVFVLP LIMAALQEEI LMPIVPGEGP FGLIVCPSRE LARQTHEVIE MFLAPLMEAG YPEIRPLLCI GGVDMRTQME
301: VVKKGVHIVV ATPGRLKDLL SKKKMNLDNC RYLTLDEADR LVDLGFEDDI REVFDHFKAQ RQTLLFSATM PEKIQNFAKS ALVKPIIVNV GRAGAANLDV
401: IQEVEYVKEE ARIIYLLECL QKTPPPVLVF CEHKADVDYI QEFLLLKGVE AVAIHGGKDD EERKDAFKSF KASEKDVLVA TDVASKGLDI PDIQHVINYD
501: MPAEIENYVH RIGRTGRRGK TGVATTFINK NQTETTLLDL KQLLIESKQR LPPILADLDD PQEDDKVAIA QQSGVKGCAF CGGLGHRIEA CPKQQLQNSV
601: TLARARSDYF GGGGYRGEI

Best Arabidopsis Sequence Match ( AT5G51280.1 )
(BLAST)

001: MESIMEEADS YIEYVSVAER RAIAAQKILQ RKGKASELEE EADKEKLAEA KPSLLVQATQ LKRDVPEVSA TEQIILQEKE MMEHLSDKKT LMSVRELAKG
101: ITYTEPLLTG WKPPLHIRKM SSKQRDLIRK QWHIIVNGDD IPPPIKNFKD MKFPRPVLDT LKEKGIVQPT PIQVQGLPVI LAGRDMIGIA FTGSGKTLVF
201: VLPMIMIALQ EEMMMPIAAG EGPIGLIVCP SRELARQTYE VVEQFVAPLV EAGYPPLRSL LCIGGIDMRS QLEVVKRGVH IVVATPGRLK DMLAKKKMSL
301: DACRYLTLDE ADRLVDLGFE DDIREVFDHF KSQRQTLLFS ATMPTKIQIF ARSALVKPVT VNVGRAGAAN LDVIQEVEYV KQEAKIVYLL ECLQKTSPPV
401: LIFCENKADV DDIHEYLLLK GVEAVAIHGG KDQEDREYAI SSFKAGKKDV LVATDVASKG LDFPDIQHVI NYDMPAEIEN YVHRIGRTGR CGKTGIATTF
501: INKNQSETTL LDLKHLLQEA KQRIPPVLAE LNDPMEEAET IANASGVKGC AYCGGLGHRI RDCPKLEHQK SVAISNSRKD YFGSGGYRGE I

Arabidopsis Description

RH35DEAD-box ATP-dependent RNA helicase 35 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.