Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os08t0159900-01 | Rice | extracellular, nucleus | 85.04 | 48.24 |
| Os01t0911100-01 | Rice | nucleus, plastid | 27.56 | 34.38 |
| Os01t0197200-01 | Rice | plasma membrane | 28.07 | 33.81 |
| Os03t0308500-01 | Rice | mitochondrion | 35.29 | 27.27 |
| Os02t0150100-02 | Rice | cytosol | 21.01 | 27.17 |
| Os07t0301200-01 | Rice | cytosol | 22.35 | 25.98 |
| Os06t0697200-00 | Rice | cytosol | 24.54 | 23.59 |
| Os06t0602400-01 | Rice | nucleus, plasma membrane | 18.82 | 23.14 |
| Os03t0805200-01 | Rice | plastid | 24.2 | 22.61 |
| Os07t0202100-01 | Rice | nucleus | 24.2 | 22.57 |
| Os11t0599500-00 | Rice | nucleus, plasma membrane | 22.86 | 21.83 |
| Os03t0708600-02 | Rice | nucleus | 24.2 | 19.57 |
| Os01t0172200-01 | Rice | cytosol | 23.03 | 18.05 |
| Os01t0549400-01 | Rice | nucleus | 22.18 | 16.67 |
| TraesCS3B01G208800.1 | Wheat | cytosol | 17.14 | 16.53 |
| TraesCS3B01G193400.3 | Wheat | cytosol | 18.15 | 16.14 |
| Os02t0150000-00 | Rice | mitochondrion | 3.7 | 12.72 |
| Os01t0911000-01 | Rice | nucleus | 0.0 | 0.0 |
| Os08t0154200-01 | Rice | cytosol, nucleus | 0.0 | 0.0 |
Protein Annotations
| MapMan:16.4.7.1.2 | Gene3D:3.40.50.300 | UniProt:A0A0P0XCD9 | ProteinID:BAT03870.1 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0016787 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:IPR014014 | EnsemblPlantsGene:Os08g0154225 | EnsemblPlants:Os08t0154225-00 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 |
| ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF25 |
| InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SUPFAM:SSF52540 | UniParc:UPI0003939458 | SEG:seg |
Description
DEAD-box ATP-dependent RNA helicase 42. (Os08t0154225-00)
Coordinates
chr8:-:3115509..3117296
Molecular Weight (calculated)
66357.3 Da
IEP (calculated)
4.704
GRAVY (calculated)
-0.548
Length
595 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEEEVVVVV DEEESERRRQ KMIEEEKKRL DEEMELRRRR VKEWQEQKRL EEEEAKRREQ EAAAGAGTPA AAAGADGDSN AGKKWTLDGE ESDEEGYKED
101: SQNAEDDGGI TADLPSEVND ANVAAPMEED EIDPLDAFMS SMVLPEVAKL ETAVASMESM PASNMGDKNG KSAKDAVSNG DKKGQKKAMG RIMQGDDSDS
201: DYDDDDDDEG GSKDEDDEEF MKRVKKTKVE KLAIVDHSKI EYQPFRKNLY IEVKDITMMT GEEVATYRKN LELKVHGKDV PKPIKTWVQS GLTSKLLDTI
301: KKLGFEKPMP IQAQALPIIM SGRDCIGIAK TGSGKTLAFV LPMLRHVKDQ PPVVPGDGPI GLIMAPTREL VVQIHSDIKK FAKSLGINCV AIYGGSGVAQ
401: QISELKRGAE IVVCTPGRMI DILCTSSGKI TNLRRVTFLV MDEADRMFDM GFEPQITRIV QNTRPDRQTV LFSAIFPRQV EILARKVLTK PVEIQVGGRS
501: VVNKDITQLV EVRPENERFL RLLELLGEWF DRGKILVFVH SQDKCDSLLK DLFQRGYPCL SLHGGKDQTD RESTLADFKS NVCNLLIAGC ELDVK
101: SQNAEDDGGI TADLPSEVND ANVAAPMEED EIDPLDAFMS SMVLPEVAKL ETAVASMESM PASNMGDKNG KSAKDAVSNG DKKGQKKAMG RIMQGDDSDS
201: DYDDDDDDEG GSKDEDDEEF MKRVKKTKVE KLAIVDHSKI EYQPFRKNLY IEVKDITMMT GEEVATYRKN LELKVHGKDV PKPIKTWVQS GLTSKLLDTI
301: KKLGFEKPMP IQAQALPIIM SGRDCIGIAK TGSGKTLAFV LPMLRHVKDQ PPVVPGDGPI GLIMAPTREL VVQIHSDIKK FAKSLGINCV AIYGGSGVAQ
401: QISELKRGAE IVVCTPGRMI DILCTSSGKI TNLRRVTFLV MDEADRMFDM GFEPQITRIV QNTRPDRQTV LFSAIFPRQV EILARKVLTK PVEIQVGGRS
501: VVNKDITQLV EVRPENERFL RLLELLGEWF DRGKILVFVH SQDKCDSLLK DLFQRGYPCL SLHGGKDQTD RESTLADFKS NVCNLLIAGC ELDVK
0001: MEVEKSKYRS EDLDVVEEEA DLKKSRRDRD RSNERKKDKG SEKRREKDRR KKRVKSSDSE DDYDRDDDEE REKRKEKERE RRRRDKDRVK RRSERRKSSD
0101: SEDDVEEEDE RDKRRVNEKE RGHREHERDR GKDRKRDRER EERKDKERER EKDRERRERE REEREKERVK ERERREREDG ERDRREREKE RGSRRNRERE
0201: RSREVGNEES DDDVKRDLKR RRKEGGERKE KEREKSVGRS SRHEDSPKRK SVEDNGEKKE KKTREEELED EQKKLDEEVE KRRRRVQEWQ ELKRKKEEAE
0301: SESKGDADGN EPKAGKAWTL EGESDDEEGH PEEKSETEMD VDEETKPEND GDAKMVDLEN ETAATVSESG GDGAVDEEEI DPLDAFMNTM VLPEVEKFCN
0401: GAPPPAVNDG TLDSKMNGKE SGDRPKKGFN KALGRIIQGE DSDSDYSEPK NDDDPSLDED DEEFMKRVKK TKAEKLSLVD HSKIEYEPFR KNFYIEVKDI
0501: SRMTQEEVNT YRKELELKVH GKDVPRPIKF WHQTGLTSKI LDTMKKLNYE KPMPIQTQAL PIIMSGRDCI GVAKTGSGKT LGFVLPMLRH IKDQPPVEAG
0601: DGPIGLVMAP TRELVQQIHS DIRKFSKPLG IRCVPVYGGS GVAQQISELK RGTEIVVCTP GRMIDILCTS SGKITNLRRV TFLVMDEADR MFDMGFEPQI
0701: TRIIQNIRPE RQTVLFSATF PRQVETLARK VLNKPVEIQV GGRSVVNKDI TQLVEVRPES DRFLRLLELL GEWSEKGKIL VFVQSQEKCD ALYRDMIKSS
0801: YPCLSLHGGK DQTDRESTIS DFKNDVCNLL IATSVAARGL DVKELELVVN FDAPNHYEDY VHRVGRTGRA GRKGCAVTFI SEDDAKYAPD LVKALELSEQ
0901: PVPDDLKALA DGFMVKVKQG IEQAHGTGYG GSGFKFNEEE EEVRKAAKKA QAKEYGFEED KSDSEDENDV VRKAGGGEIS QQQATFAQIA AIAAAAKAAA
1001: AAPVSAPVTA NQLLANGGGL AAMPGVLPVT VPTLPSEGAG RAAAMVAAMN LQHNLAKIQA DAMPEHYEAE LEINDFPQNA RWKVTHKETL GPISEWTGAA
1101: ITTRGQFYPT GRIPGPGERK LYLFIEGPSE KSVKHAKAEL KRVLEDITNQ AMSSLPGGAS GRYSVL
0101: SEDDVEEEDE RDKRRVNEKE RGHREHERDR GKDRKRDRER EERKDKERER EKDRERRERE REEREKERVK ERERREREDG ERDRREREKE RGSRRNRERE
0201: RSREVGNEES DDDVKRDLKR RRKEGGERKE KEREKSVGRS SRHEDSPKRK SVEDNGEKKE KKTREEELED EQKKLDEEVE KRRRRVQEWQ ELKRKKEEAE
0301: SESKGDADGN EPKAGKAWTL EGESDDEEGH PEEKSETEMD VDEETKPEND GDAKMVDLEN ETAATVSESG GDGAVDEEEI DPLDAFMNTM VLPEVEKFCN
0401: GAPPPAVNDG TLDSKMNGKE SGDRPKKGFN KALGRIIQGE DSDSDYSEPK NDDDPSLDED DEEFMKRVKK TKAEKLSLVD HSKIEYEPFR KNFYIEVKDI
0501: SRMTQEEVNT YRKELELKVH GKDVPRPIKF WHQTGLTSKI LDTMKKLNYE KPMPIQTQAL PIIMSGRDCI GVAKTGSGKT LGFVLPMLRH IKDQPPVEAG
0601: DGPIGLVMAP TRELVQQIHS DIRKFSKPLG IRCVPVYGGS GVAQQISELK RGTEIVVCTP GRMIDILCTS SGKITNLRRV TFLVMDEADR MFDMGFEPQI
0701: TRIIQNIRPE RQTVLFSATF PRQVETLARK VLNKPVEIQV GGRSVVNKDI TQLVEVRPES DRFLRLLELL GEWSEKGKIL VFVQSQEKCD ALYRDMIKSS
0801: YPCLSLHGGK DQTDRESTIS DFKNDVCNLL IATSVAARGL DVKELELVVN FDAPNHYEDY VHRVGRTGRA GRKGCAVTFI SEDDAKYAPD LVKALELSEQ
0901: PVPDDLKALA DGFMVKVKQG IEQAHGTGYG GSGFKFNEEE EEVRKAAKKA QAKEYGFEED KSDSEDENDV VRKAGGGEIS QQQATFAQIA AIAAAAKAAA
1001: AAPVSAPVTA NQLLANGGGL AAMPGVLPVT VPTLPSEGAG RAAAMVAAMN LQHNLAKIQA DAMPEHYEAE LEINDFPQNA RWKVTHKETL GPISEWTGAA
1101: ITTRGQFYPT GRIPGPGERK LYLFIEGPSE KSVKHAKAEL KRVLEDITNQ AMSSLPGGAS GRYSVL
Arabidopsis Description
RH42DEAD-box ATP-dependent RNA helicase 42 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0U8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.