Factsheet for Os11t0599500-00

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus

Predictor Summary:

nucleus 3
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 18203134
plasma membrane: 27800704

msms PMID: 18203134 doi

G Li, BR Nallamilli, F Tan, Z Peng

Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G148700.1	Wheat	golgi	82.83	85.86
TraesCS4B01G126000.1	Wheat	cytosol, plastid	82.83	85.86
HORVU4Hr1G031280.1	Barley	cytosol, plastid	82.66	85.69
Zm00001d048924_P001	Maize	plasma membrane	82.99	85.03
KXG28851	Sorghum	cytosol, plastid	84.27	84.0
CDY47978	Canola	plastid	55.06	82.06
TraesCS4A01G141400.1	Wheat	plastid	83.15	78.96
KRH58901	Soybean	nucleus	76.4	77.52
VIT_13s0156g00070.t01	Wine grape	cytosol	76.56	77.31
KRH42811	Soybean	endoplasmic reticulum	76.4	76.9
KRG97325	Soybean	endoplasmic reticulum	72.39	76.31
KRH31589	Soybean	nucleus	72.71	75.0
PGSC0003DMT400010921	Potato	cytosol	71.75	74.25
CDX98304	Canola	cytosol, plastid	54.57	73.75
PGSC0003DMT400081851	Potato	cytosol	71.27	73.51
Solyc03g052980.2.1	Tomato	nucleus	72.07	73.37
Solyc01g005960.2.1	Tomato	plastid	70.95	73.18
PGSC0003DMT400002828	Potato	cytosol	71.75	72.33
KRH38030	Soybean	endoplasmic reticulum	70.63	72.01
CDY06034	Canola	cytosol	66.29	71.83
Os07t0202100-01	Rice	nucleus	73.52	71.79
Os03t0805200-01	Rice	plastid	73.35	71.74
KRH71800	Soybean	plastid	70.14	71.52
CDX71948	Canola	cytosol	68.38	71.36
Bra016869.1-P	Field mustard	cytosol, plastid	69.5	71.1
CDY14843	Canola	cytosol, plastid	69.5	70.75
AT3G58510.2	Thale cress	cytosol	69.18	70.42
CDX67749	Canola	cytosol	67.9	70.27
Bra007399.1-P	Field mustard	cytosol	68.86	70.21
CDX98301	Canola	cytosol	67.58	70.05
Bra003341.1-P	Field mustard	cytosol	68.38	69.84
AT2G42520.2	Thale cress	nucleus, plastid	69.66	68.56
CDY49232	Canola	cytosol	68.54	68.32
CDX67752	Canola	cytosol	69.18	68.09
CDX71944	Canola	cytosol	68.7	67.51
Bra003343.1-P	Field mustard	cytosol	69.02	66.87
Bra007402.1-P	Field mustard	cytosol	68.86	66.82
AT3G58570.1	Thale cress	cytosol	68.22	65.79
Os06t0602400-01	Rice	nucleus, plasma membrane	47.03	60.54
Bra014568.1-P	Field mustard	cytosol	55.54	51.95
CDX88990	Canola	cytosol, plastid	43.5	48.57
Os01t0197200-01	Rice	plasma membrane	28.89	36.44
CDY00570	Canola	nucleus	35.47	36.41
Os02t0150100-02	Rice	cytosol	26.16	35.43
Os07t0301200-01	Rice	cytosol	27.29	33.2
Os01t0911100-01	Rice	nucleus, plastid	24.72	32.29
Os06t0697200-00	Rice	cytosol	27.93	28.11
Os01t0172200-01	Rice	cytosol	33.07	27.14
Os01t0549400-01	Rice	nucleus	33.55	26.39
Os03t0708600-02	Rice	nucleus	30.66	25.95
Os02t0150000-00	Rice	mitochondrion	7.06	25.43
Os03t0308500-01	Rice	mitochondrion	30.98	25.06
Os08t0154225-00	Rice	cytosol	21.83	22.86
Os08t0159900-01	Rice	extracellular, nucleus	29.86	17.73
Os08t0154200-01	Rice	cytosol, nucleus	1.77	5.14
Os01t0911000-01	Rice	nucleus	0.32	0.6

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:4350856	ProteinID:ABA94715.1	ProteinID:BAF28584.1	ProteinID:BAT14744.1
InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	EnsemblPlantsGene:Os11g0599500	EnsemblPlants:Os11t0599500-00	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF363	UniProt:Q2R1M8	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
UniParc:UPI0000681F11	RefSeq:XP_015617825.1	SEG:seg	:	:	:

Description

RNA helicase 52CSimilar to RNA helicase (Fragment). (Os11t0599500-00)

Coordinates

chr11:+:22949431..22954549

Molecular Weight (calculated)

65991.6 Da

IEP (calculated)

8.207

GRAVY (calculated)

-0.438

Length

623 amino acids

Sequence
(BLAST)

001: MATPSRTSWA DVADADPAPA PAPAANGPAR PDRSSYVPPH LRNRGASSGG GAAAPPPSSS SSSAPPPRAA PGLLAPRPAA AGMGRMGGGG GGGGFGGPRR
101: WDREPNPFGN DGDAAAGAGD EPEVFDAHQN TGINFDAYED IPVETSGREV PPPVGTFAEI DLGQALNDNI RRCKYVRPTP VQRYAIPISL AGRDLMACAQ
201: TGSGKTAAFC FPIISGIMRG PPAQRPQRGG MRTACPLALI LSPTRELSMQ IHEEARKFSY QTGVRVVVAY GGAPINQQLR DLERGVDILV ATPGRLVDLL
301: ERARVSLQSI RYLALDEADR MLDMGFEPQV RRIVEQMDMP PPGARQTMLF SATFPKEIQR MASDFLENYI FLAVGRVGSS TDLIVQRVEF VQEADKRSHL
401: MDLLHAQRDS ATPGKPTLTL VFVETKRGAD SLEHWLCMNG FPATSIHGDR NQQEREYALR SFKSGHTPIL VATDVAARGL DIPHVAHVVN FDLPNDIDDY
501: VHRIGRTGRA GKSGLATAFF NENNSSMARS LAELMQESNQ EVPAWLSRYA ARPSYGGGGG RNRRSGGGSR FGGRDFRRDS SSGRGGGDYY GGGSSGGAGG
601: YGGSSAYGGG GYGGGAGAPS AWD

Best Arabidopsis Sequence Match ( AT2G42520.3 )
(BLAST)

001: MSASWADVAD SENTGSGSSN QNSHPSRPAY VPPHLRNRPA ASEPVAPLPA NDRVGYGGPP SGSRWAPGGS GVGVGGGGGY RADAGRPGSG SGYGGRGGGG
101: WNNRSGGWDR REREVNPFEN DDSEPEPAFT EQDNTVINFD AYEDIPIETS GDNVPPPVNT FAEIDLGEAL NLNIRRCKYV KPTPVQRHAI PILLEGRDLM
201: ACAQTGSGKT AAFCFPIISG IMKDQHVQRP RGSRTVYPLA VILSPTRELA SQIHDEAKKF SYQTGVKVVV AYGGTPINQQ LRELERGVDI LVATPGRLND
301: LLERARVSMQ MIRFLALDEA DRMLDMGFEP QIRKIVEQMD MPPRGVRQTL LFSATFPREI QRLAADFLAN YIFLAVGRVG SSTDLIVQRV EFVLDSDKRS
401: HLMDLLHAQR ENGIQGKQAL TLVFVETKRG ADSLENWLCI NGFPATSIHG DRTQQEREVA LKAFKSGRTP ILVATDVAAR GLDIPHVAHV VNFDLPNDID
501: DYVHRIGRTG RAGKSGLATA FFNDGNTSLA RPLAELMQEA NQEVPEWLTR YASRSSFGGG KNRRSGGRFG GRDFRREGSF GSGRGGYGGG GGGYGGGGGY
601: GGGGGYGGGG GYGGGYGGAS SGGYGGEPPS AWD

Arabidopsis Description

RH37DEAD-box ATP-dependent RNA helicase 37 [Source:UniProtKB/Swiss-Prot;Acc:Q84W89]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.