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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 3
  • plastid 3
  • cytosol 3
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, nucleus, plastid
BaCelLo:nucleus
EpiLoc:nucleus
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:plastid
TargetP:plastid
WoLF PSORT:cytosol
YLoc:cytosol
plastid: 20363867
plastid: 22908117
plastid: 26371478
unclear: 26455813
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 20363867 doi
C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
msms PMID: 26371478 doi
M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400081851 Potato cytosol 97.85 97.85
VIT_06s0004g00850.t01 Wine grape cytosol 50.17 79.32
KRG97325 Soybean endoplasmic reticulum 77.48 79.19
KRH58901 Soybean nucleus 79.8 78.5
KRH42811 Soybean endoplasmic reticulum 79.64 77.71
Solyc03g052980.2.1 Tomato nucleus 78.15 77.12
KRH31589 Soybean nucleus 76.16 76.16
Os11t0599500-00 Rice nucleus, plasma membrane 73.18 70.95
TraesCS4D01G148700.1 Wheat golgi 69.87 70.22
TraesCS4B01G126000.1 Wheat cytosol, plastid 69.87 70.22
HORVU4Hr1G031280.1 Barley cytosol, plastid 69.87 70.22
Zm00001d048924_P001 Maize plasma membrane 70.36 69.9
KXG28851 Sorghum cytosol, plastid 70.36 68.0
TraesCS4A01G141400.1 Wheat plastid 69.37 63.87
Solyc12g044860.1.1 Tomato nucleus 30.46 38.41
Solyc09g015930.2.1 Tomato plastid 32.28 34.95
Solyc12g035130.1.1 Tomato nucleus 33.28 32.84
Solyc08g076200.2.1 Tomato nucleus 28.64 31.28
Solyc03g112350.2.1 Tomato nucleus 32.95 30.57
Solyc02g086660.2.1 Tomato nucleus 35.1 30.03
Solyc03g117440.2.1 Tomato cytosol, nucleus 29.14 29.58
Solyc06g068280.2.1 Tomato extracellular, nucleus 29.14 29.58
Solyc02g068190.1.1 Tomato cytosol, nucleus 29.47 26.89
Solyc02g081290.2.1 Tomato nucleus 27.65 25.57
Solyc01g079330.2.1 Tomato nucleus 32.45 25.32
Solyc12g098700.1.1 Tomato nucleus 32.95 17.35
Solyc01g057760.2.1 Tomato nucleus 34.11 16.87
Protein Annotations
Gene3D:3.40.50.300MapMan:35.1InterPro:DEAD/DEAH_box_helicase_domGO:GO:0000166GO:GO:0003674GO:GO:0003676
GO:GO:0003824GO:GO:0004004GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0005730GO:GO:0005737GO:GO:0006139GO:GO:0008150
GO:GO:0008152GO:GO:0009987GO:GO:0010501GO:GO:0016787InterPro:Helicase_ATP-bdInterPro:Helicase_C
InterPro:IPR001650InterPro:IPR014001InterPro:IPR014014UniProt:K4ASG2InterPro:P-loop_NTPasePFAM:PF00270
PFAM:PF00271PFscan:PS51192PFscan:PS51194PFscan:PS51195PANTHER:PTHR24031PANTHER:PTHR24031:SF363
InterPro:RNA_helicase_DEAD_Q_motifSMART:SM00487SMART:SM00490SUPFAM:SSF52540EnsemblPlantsGene:Solyc01g005960.2EnsemblPlants:Solyc01g005960.2.1
UniParc:UPI0002761EBBSEG:seg::::
Description
No Description!
Coordinates
chr1:+:625583..632996
Molecular Weight (calculated)
65713.3 Da
IEP (calculated)
8.205
GRAVY (calculated)
-0.433
Length
604 amino acids
Sequence
(BLAST)
001: MSMSWADSVS AAENPAGAPS KSAYVPPHLR NRPSTDPPAQ ASYAGAAASL GNDHSGYGVP NMVGSRWSGQ RNEYQSGYAG GGGRGGGWNG RSGGWDRGRV
101: REVNPFTNDD SEPVTEQESS AINFDAYEDI PVETSGDNVP PPVNTFAEID LGEAVNENIR RCKYVKPTPV QRHAIPISLA GRDLMACAQT GSGKTAAFCF
201: PIISGIMRGQ FPRPPRPRMA FPLALILSPT RELSCQIHDE AKKFSYQTGV RVVVAYGGAP INQQLRELER GVHILVATPG RLVDLLERAR VSLQMIRYLA
301: LDEADRMLDM GFEPQIRKIV QQMDMPPPGV RQTMLFSATF PKEIQRLASD FLSSYIFLAV GRVGSSTDLI VQRVEYVQET DKRSHLMDLL HAQKENGVHG
401: KQALTLVFVE TKKGADALEH WLCMNGFPAA AIHGDRTQQE REHALRSFKT GYTPILVATD VAARGLDIPH VAHVVNFDLP NDIDDYVHRI GRTGRAGKTG
501: LATAFFNENN SSLARSLSDL MQEANQEVPA WLSRFAARST YGGKNRRGGA RFGARDFRRD SSYNRGASGG STDYYGGGAN MNSGYASGGY NASYGTAGVT
601: SAWD
Best Arabidopsis Sequence Match ( AT2G42520.3 )
(BLAST)
001: MSASWADVAD SENTGSGSSN QNSHPSRPAY VPPHLRNRPA ASEPVAPLPA NDRVGYGGPP SGSRWAPGGS GVGVGGGGGY RADAGRPGSG SGYGGRGGGG
101: WNNRSGGWDR REREVNPFEN DDSEPEPAFT EQDNTVINFD AYEDIPIETS GDNVPPPVNT FAEIDLGEAL NLNIRRCKYV KPTPVQRHAI PILLEGRDLM
201: ACAQTGSGKT AAFCFPIISG IMKDQHVQRP RGSRTVYPLA VILSPTRELA SQIHDEAKKF SYQTGVKVVV AYGGTPINQQ LRELERGVDI LVATPGRLND
301: LLERARVSMQ MIRFLALDEA DRMLDMGFEP QIRKIVEQMD MPPRGVRQTL LFSATFPREI QRLAADFLAN YIFLAVGRVG SSTDLIVQRV EFVLDSDKRS
401: HLMDLLHAQR ENGIQGKQAL TLVFVETKRG ADSLENWLCI NGFPATSIHG DRTQQEREVA LKAFKSGRTP ILVATDVAAR GLDIPHVAHV VNFDLPNDID
501: DYVHRIGRTG RAGKSGLATA FFNDGNTSLA RPLAELMQEA NQEVPEWLTR YASRSSFGGG KNRRSGGRFG GRDFRREGSF GSGRGGYGGG GGGYGGGGGY
601: GGGGGYGGGG GYGGGYGGAS SGGYGGEPPS AWD
Arabidopsis Description
RH37DEAD-box ATP-dependent RNA helicase 37 [Source:UniProtKB/Swiss-Prot;Acc:Q84W89]
SUBAcon: [plastid,nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.