Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 3
- cytosol 3
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
plastid:
20363867
plastid: 22908117 plastid: 26371478 unclear: 26455813 nucleus: 28394025 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
22908117
doi
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID:
20363867
doi
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
msms PMID:
26371478
doi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID:
26455813
doi
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400081851 | Potato | cytosol | 97.85 | 97.85 |
VIT_06s0004g00850.t01 | Wine grape | cytosol | 50.17 | 79.32 |
KRG97325 | Soybean | endoplasmic reticulum | 77.48 | 79.19 |
KRH58901 | Soybean | nucleus | 79.8 | 78.5 |
KRH42811 | Soybean | endoplasmic reticulum | 79.64 | 77.71 |
Solyc03g052980.2.1 | Tomato | nucleus | 78.15 | 77.12 |
KRH31589 | Soybean | nucleus | 76.16 | 76.16 |
Os11t0599500-00 | Rice | nucleus, plasma membrane | 73.18 | 70.95 |
TraesCS4D01G148700.1 | Wheat | golgi | 69.87 | 70.22 |
TraesCS4B01G126000.1 | Wheat | cytosol, plastid | 69.87 | 70.22 |
HORVU4Hr1G031280.1 | Barley | cytosol, plastid | 69.87 | 70.22 |
Zm00001d048924_P001 | Maize | plasma membrane | 70.36 | 69.9 |
KXG28851 | Sorghum | cytosol, plastid | 70.36 | 68.0 |
TraesCS4A01G141400.1 | Wheat | plastid | 69.37 | 63.87 |
Solyc12g044860.1.1 | Tomato | nucleus | 30.46 | 38.41 |
Solyc09g015930.2.1 | Tomato | plastid | 32.28 | 34.95 |
Solyc12g035130.1.1 | Tomato | nucleus | 33.28 | 32.84 |
Solyc08g076200.2.1 | Tomato | nucleus | 28.64 | 31.28 |
Solyc03g112350.2.1 | Tomato | nucleus | 32.95 | 30.57 |
Solyc02g086660.2.1 | Tomato | nucleus | 35.1 | 30.03 |
Solyc03g117440.2.1 | Tomato | cytosol, nucleus | 29.14 | 29.58 |
Solyc06g068280.2.1 | Tomato | extracellular, nucleus | 29.14 | 29.58 |
Solyc02g068190.1.1 | Tomato | cytosol, nucleus | 29.47 | 26.89 |
Solyc02g081290.2.1 | Tomato | nucleus | 27.65 | 25.57 |
Solyc01g079330.2.1 | Tomato | nucleus | 32.45 | 25.32 |
Solyc12g098700.1.1 | Tomato | nucleus | 32.95 | 17.35 |
Solyc01g057760.2.1 | Tomato | nucleus | 34.11 | 16.87 |
Protein Annotations
Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
GO:GO:0003824 | GO:GO:0004004 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0008150 |
GO:GO:0008152 | GO:GO:0009987 | GO:GO:0010501 | GO:GO:0016787 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | UniProt:K4ASG2 | InterPro:P-loop_NTPase | PFAM:PF00270 |
PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF363 |
InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | EnsemblPlantsGene:Solyc01g005960.2 | EnsemblPlants:Solyc01g005960.2.1 |
UniParc:UPI0002761EBB | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr1:+:625583..632996
Molecular Weight (calculated)
65713.3 Da
IEP (calculated)
8.205
GRAVY (calculated)
-0.433
Length
604 amino acids
Sequence
(BLAST)
(BLAST)
001: MSMSWADSVS AAENPAGAPS KSAYVPPHLR NRPSTDPPAQ ASYAGAAASL GNDHSGYGVP NMVGSRWSGQ RNEYQSGYAG GGGRGGGWNG RSGGWDRGRV
101: REVNPFTNDD SEPVTEQESS AINFDAYEDI PVETSGDNVP PPVNTFAEID LGEAVNENIR RCKYVKPTPV QRHAIPISLA GRDLMACAQT GSGKTAAFCF
201: PIISGIMRGQ FPRPPRPRMA FPLALILSPT RELSCQIHDE AKKFSYQTGV RVVVAYGGAP INQQLRELER GVHILVATPG RLVDLLERAR VSLQMIRYLA
301: LDEADRMLDM GFEPQIRKIV QQMDMPPPGV RQTMLFSATF PKEIQRLASD FLSSYIFLAV GRVGSSTDLI VQRVEYVQET DKRSHLMDLL HAQKENGVHG
401: KQALTLVFVE TKKGADALEH WLCMNGFPAA AIHGDRTQQE REHALRSFKT GYTPILVATD VAARGLDIPH VAHVVNFDLP NDIDDYVHRI GRTGRAGKTG
501: LATAFFNENN SSLARSLSDL MQEANQEVPA WLSRFAARST YGGKNRRGGA RFGARDFRRD SSYNRGASGG STDYYGGGAN MNSGYASGGY NASYGTAGVT
601: SAWD
101: REVNPFTNDD SEPVTEQESS AINFDAYEDI PVETSGDNVP PPVNTFAEID LGEAVNENIR RCKYVKPTPV QRHAIPISLA GRDLMACAQT GSGKTAAFCF
201: PIISGIMRGQ FPRPPRPRMA FPLALILSPT RELSCQIHDE AKKFSYQTGV RVVVAYGGAP INQQLRELER GVHILVATPG RLVDLLERAR VSLQMIRYLA
301: LDEADRMLDM GFEPQIRKIV QQMDMPPPGV RQTMLFSATF PKEIQRLASD FLSSYIFLAV GRVGSSTDLI VQRVEYVQET DKRSHLMDLL HAQKENGVHG
401: KQALTLVFVE TKKGADALEH WLCMNGFPAA AIHGDRTQQE REHALRSFKT GYTPILVATD VAARGLDIPH VAHVVNFDLP NDIDDYVHRI GRTGRAGKTG
501: LATAFFNENN SSLARSLSDL MQEANQEVPA WLSRFAARST YGGKNRRGGA RFGARDFRRD SSYNRGASGG STDYYGGGAN MNSGYASGGY NASYGTAGVT
601: SAWD
001: MSASWADVAD SENTGSGSSN QNSHPSRPAY VPPHLRNRPA ASEPVAPLPA NDRVGYGGPP SGSRWAPGGS GVGVGGGGGY RADAGRPGSG SGYGGRGGGG
101: WNNRSGGWDR REREVNPFEN DDSEPEPAFT EQDNTVINFD AYEDIPIETS GDNVPPPVNT FAEIDLGEAL NLNIRRCKYV KPTPVQRHAI PILLEGRDLM
201: ACAQTGSGKT AAFCFPIISG IMKDQHVQRP RGSRTVYPLA VILSPTRELA SQIHDEAKKF SYQTGVKVVV AYGGTPINQQ LRELERGVDI LVATPGRLND
301: LLERARVSMQ MIRFLALDEA DRMLDMGFEP QIRKIVEQMD MPPRGVRQTL LFSATFPREI QRLAADFLAN YIFLAVGRVG SSTDLIVQRV EFVLDSDKRS
401: HLMDLLHAQR ENGIQGKQAL TLVFVETKRG ADSLENWLCI NGFPATSIHG DRTQQEREVA LKAFKSGRTP ILVATDVAAR GLDIPHVAHV VNFDLPNDID
501: DYVHRIGRTG RAGKSGLATA FFNDGNTSLA RPLAELMQEA NQEVPEWLTR YASRSSFGGG KNRRSGGRFG GRDFRREGSF GSGRGGYGGG GGGYGGGGGY
601: GGGGGYGGGG GYGGGYGGAS SGGYGGEPPS AWD
101: WNNRSGGWDR REREVNPFEN DDSEPEPAFT EQDNTVINFD AYEDIPIETS GDNVPPPVNT FAEIDLGEAL NLNIRRCKYV KPTPVQRHAI PILLEGRDLM
201: ACAQTGSGKT AAFCFPIISG IMKDQHVQRP RGSRTVYPLA VILSPTRELA SQIHDEAKKF SYQTGVKVVV AYGGTPINQQ LRELERGVDI LVATPGRLND
301: LLERARVSMQ MIRFLALDEA DRMLDMGFEP QIRKIVEQMD MPPRGVRQTL LFSATFPREI QRLAADFLAN YIFLAVGRVG SSTDLIVQRV EFVLDSDKRS
401: HLMDLLHAQR ENGIQGKQAL TLVFVETKRG ADSLENWLCI NGFPATSIHG DRTQQEREVA LKAFKSGRTP ILVATDVAAR GLDIPHVAHV VNFDLPNDID
501: DYVHRIGRTG RAGKSGLATA FFNDGNTSLA RPLAELMQEA NQEVPEWLTR YASRSSFGGG KNRRSGGRFG GRDFRREGSF GSGRGGYGGG GGGYGGGGGY
601: GGGGGYGGGG GYGGGYGGAS SGGYGGEPPS AWD
Arabidopsis Description
RH37DEAD-box ATP-dependent RNA helicase 37 [Source:UniProtKB/Swiss-Prot;Acc:Q84W89]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.