Factsheet for Solyc12g035130.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

plastid: 22908117
nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400080614	Potato	nucleus	97.55	97.39
Solyc02g086660.2.1	Tomato	nucleus	76.47	66.29
Bra040699.1-P	Field mustard	cytosol	64.05	64.37
AT3G01540.2	Thale cress	cytosol	64.71	63.97
Bra001004.1-P	Field mustard	cytosol	65.52	63.05
Bra023478.1-P	Field mustard	cytosol	66.18	59.91
CDY28671	Canola	cytosol	64.71	59.73
CDX91943	Canola	cytosol	64.38	59.25
CDX91036	Canola	cytosol	65.85	58.92
CDX74304	Canola	cytosol	64.71	57.56
AT5G14610.1	Thale cress	cytosol	65.85	56.6
TraesCS3A01G130200.4	Wheat	cytosol	58.99	55.54
TraesCS3B01G149300.8	Wheat	cytosol	58.99	55.54
KRG93254	Soybean	endoplasmic reticulum	70.1	55.28
TraesCS3D01G131100.11	Wheat	cytosol	58.99	55.28
KRH56577	Soybean	nucleus	69.77	55.1
Zm00001d008725_P003	Maize	cytosol	61.11	53.97
CDX85591	Canola	cytosol	65.69	53.46
Zm00001d039673_P002	Maize	cytosol	60.46	52.78
VIT_14s0066g01020.t01	Wine grape	cytosol	74.18	52.61
OQU86230	Sorghum	cytosol	60.62	51.89
HORVU3Hr1G024610.13	Barley	cytosol, plastid	59.8	51.77
GSMUA_Achr8P31890_001	Banana	nucleus	64.05	49.87
Os01t0172200-01	Rice	cytosol	61.44	49.54
Solyc12g044860.1.1	Tomato	nucleus	37.42	47.81
Zm00001d011155_P012	Maize	nucleus	61.11	47.77
KXG32714	Sorghum	nucleus	61.44	47.53
Zm00001d044510_P002	Maize	mitochondrion	62.25	47.51
Os01t0549400-01	Rice	nucleus	60.29	46.59
TraesCS3D01G202500.3	Wheat	nucleus	59.15	44.75
TraesCS3A01G194200.1	Wheat	nucleus	56.86	44.44
TraesCS3B01G230800.1	Wheat	nucleus	56.54	44.08
Solyc03g112350.2.1	Tomato	nucleus	38.4	36.1
Solyc01g005960.2.1	Tomato	plastid	32.84	33.28
Solyc08g076200.2.1	Tomato	nucleus	29.74	32.91
Solyc03g052980.2.1	Tomato	nucleus	32.52	32.52
Solyc01g057760.2.1	Tomato	nucleus	63.07	31.61
Solyc09g015930.2.1	Tomato	plastid	27.29	29.93
Solyc06g068280.2.1	Tomato	extracellular, nucleus	26.47	27.23
Solyc03g117440.2.1	Tomato	cytosol, nucleus	25.98	26.72
Solyc01g079330.2.1	Tomato	nucleus	32.68	25.84
Solyc02g068190.1.1	Tomato	cytosol, nucleus	26.14	24.17
Solyc02g081290.2.1	Tomato	nucleus	24.84	23.28
Solyc12g098700.1.1	Tomato	nucleus	28.76	15.34

Protein Annotations

Gene3D:2.20.70.10	Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501
GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001202	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	UniProt:K4DDY2	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039
ScanProsite:PS01159	PFscan:PS50020	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF255	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00456	SMART:SM00487	SMART:SM00490
SUPFAM:SSF51045	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc12g035130.1	EnsemblPlants:Solyc12g035130.1.1	UniParc:UPI0002769D05	InterPro:WW_dom
InterPro:WW_dom_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr12:-:60087026..60093040

Molecular Weight (calculated)

66667.7 Da

IEP (calculated)

10.187

GRAVY (calculated)

-0.554

Length

612 amino acids

Sequence
(BLAST)

001: MAAILTASSG PSYAPEDPTL PKPWKGLVDG TTGYIYFWNP ETNDTQYERP VHSSNGVSAL AQKSAVFVSS SVQKPSQGQH YDPDGRHSRG SNNKVTSLKG
101: DQNARSSSDH HEGYDSLGVG TDISQESYCR HNEISVTGGD VPAPLTSFEA TGFPSEIVRE MRQAGFSAPT PIQAQSWPVA LQGRDIVAIA KTGSGKTLGY
201: LIPGFIHLKN RRSNPQLGPT ILVLSPTREL ATQIQAEAVK FGKSSRISCT CLYGGAPKGP QLRELSRGVD IVVATPGRLN DILEMRRLSL GQVSYLVLDE
301: ADRMLDMGFE PQIRKIVKEV PKQRQTLMYT ATWPKGVRKI AADLLVNSVQ VNIGNVDELA ANKSITQHIE VLSSMEKQRR LEQILRSNEP GSKIIIFCST
401: KKMCDQLSRN LTRNFGAAAI HGDKSQGERD YVLSQFRTGR SPVLVATDVA ARGLDIKDIR VVVNFDFPTG IEDYVHRIGR TGRAGASGLA YTFFSDQDAK
501: HALDLVKVLE GANQSVPTEL RDMVSRGGGM GKARWGSGQG GRGGRFNGSY VSRNGGRGDW NNSSSERGGG RGYDRGSRDS DRFLRGDASR KRSRSRSPNK
601: GSGWSDKKSR FA

Best Arabidopsis Sequence Match ( AT5G14610.2 )
(BLAST)

001: MAATASAIRY APEDPNLPKP WKGLVDSRTG YLYFWNPETN VTQYERPASS APPKLAAIPV SSSVQTNQQS SSGFNSGKED DKYGRGSDGP KSDSGSRFNE
101: AGRTGPISSN DAASGLGNAS SGGSSARGPP SSAAGNELSP EAYCRKHEIT VSGGQVPPPL MSFEATGLPN ELLREVYSAG FSAPSPIQAQ SWPIAMQNRD
201: IVAIAKTGSG KTLGYLIPGF MHLQRIHNDS RMGPTILVLS PTRELATQIQ VEALKFGKSS KISCACLYGG APKGPQLKEI ERGVDIVVAT PGRLNDILEM
301: KRISLHQVSY LVLDEADRML DMGFEPQIRK IVNEVPTKRQ TLMYTATWPK EVRKIAADLL VNPAQVNIGN VDELVANKSI TQTIEVLAPM EKHSRLEQIL
401: RSQEPGSKII IFCSTKRMCD QLARNLTRTF GAAAIHGDKS QAERDDVLNQ FRSGRTPVLV ATDVAARGLD VKDIRVVVNY DFPNGVEDYV HRIGRTGRAG
501: ATGLAYTFFG DQDAKHASDL IKILEGANQK VPPQVREMAT RGGGGMNKFR RWGTPSSGGG GGRGGYGDSG YGGRGESGYG SRGDSGYGGR GDSGGRGSWA
601: PSRDSSGSSG WGRERSRSPE RFRGGPPSTS SPPRSFHEAM MMKNR

Arabidopsis Description

DEAD box RNA helicase family protein [Source:UniProtKB/TrEMBL;Acc:F4K6V1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.