Factsheet for Zm00001d039673_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU86230	Sorghum	cytosol	90.87	89.09
Zm00001d008725_P003	Maize	cytosol	86.88	87.88
TraesCS3A01G130200.4	Wheat	cytosol	69.9	75.38
TraesCS3B01G149300.8	Wheat	cytosol	69.04	74.46
TraesCS3D01G131100.11	Wheat	cytosol	69.33	74.43
Os01t0172200-01	Rice	cytosol	76.32	70.49
HORVU3Hr1G024610.13	Barley	cytosol, plastid	69.61	69.02
AT3G01540.2	Thale cress	cytosol	55.06	62.36
Bra040699.1-P	Field mustard	cytosol	53.92	62.07
Bra001004.1-P	Field mustard	cytosol	56.06	61.79
Solyc12g035130.1.1	Tomato	nucleus	52.78	60.46
PGSC0003DMT400080614	Potato	nucleus	52.78	60.36
CDX91943	Canola	cytosol	54.78	57.74
CDY28671	Canola	cytosol	53.78	56.86
Bra023478.1-P	Field mustard	cytosol	54.78	56.8
CDX74304	Canola	cytosol	55.21	56.25
CDX91036	Canola	cytosol	54.78	56.14
Solyc02g086660.2.1	Tomato	nucleus	55.35	54.96
AT5G14610.1	Thale cress	cytosol	55.78	54.92
PGSC0003DMT400001391	Potato	cytosol	55.35	53.15
KRH56577	Soybean	nucleus	57.49	52.0
KRG93254	Soybean	endoplasmic reticulum	57.49	51.93
CDX85591	Canola	cytosol	55.06	51.33
Zm00001d011155_P012	Maize	nucleus	55.06	49.3
Zm00001d044510_P002	Maize	mitochondrion	55.78	48.75
VIT_14s0066g01020.t01	Wine grape	cytosol	57.77	46.93
Zm00001d039452_P002	Maize	cytosol	33.95	43.04
Zm00001d042416_P002	Maize	extracellular, plasma membrane	35.38	38.87
Zm00001d019449_P004	Maize	nucleus	24.82	34.25
Zm00001d036897_P001	Maize	extracellular	28.82	32.9
Zm00001d048924_P001	Maize	plasma membrane	28.39	32.73
Zm00001d007755_P001	Maize	plastid	28.82	31.22
Zm00001d007757_P004	Maize	plastid	28.53	30.21
Zm00001d048632_P001	Maize	cytosol	53.64	27.21
Zm00001d007719_P010	Maize	cytosol	52.5	27.2
Zm00001d047502_P001	Maize	extracellular	23.4	26.54
Zm00001d047633_P002	Maize	nucleus	27.25	24.87
Zm00001d028898_P011	Maize	cytosol	26.53	24.16
Zm00001d033704_P007	Maize	extracellular	24.82	23.58
Zm00001d013453_P001	Maize	nucleus	24.39	23.3
Zm00001d024533_P001	Maize	nucleus	26.82	17.65

Protein Annotations

EntrezGene:100381784	Gene3D:2.20.70.10	Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1D6MK72	InterPro:DEAD/DEAH_box_helicase_dom
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001202
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	ProteinID:ONM29653.1	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	ScanProsite:PS00039	ScanProsite:PS01159	PFscan:PS50020	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF255	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00456
SMART:SM00487	SMART:SM00490	SUPFAM:SSF51045	SUPFAM:SSF52540	UniParc:UPI0008454D12	InterPro:WW_dom
InterPro:WW_dom_sf	EnsemblPlantsGene:Zm00001d039673	EnsemblPlants:Zm00001d039673_P002	EnsemblPlants:Zm00001d039673_T002	SEG:seg	:

Description

DEAD-box ATP-dependent RNA helicase 14

Coordinates

chr3:+:11568307..11574682

Molecular Weight (calculated)

76870.1 Da

IEP (calculated)

9.748

GRAVY (calculated)

-0.599

Length

701 amino acids

Sequence
(BLAST)

001: MTSSASAPAS NGPRYAPPDP TLPKPWRGLI DGNTGYLYFW NPETKVTQYE RPVAAVPNSP PQPPGYSRPE ERPRSSTPSE RSSETTVSRP QYAPLSDNRA
101: RNDHSEPHYA SGVNLSQSAP STNQVSQAAS GNQMSTEAYR AKHEITIIGN ESPAPFMTFQ STCFPSDILR EVAIVHPLYV CMIKPSFLCS RLFKSTIQVV
201: VLQAGFSAPT PIQAQSWPIA MKGRDIVAVA KTGSGKTLGY LLPGFILLKR LHHNSREGPT VLVLSPTREL ATQIQDEAIK FGRSSRISST CLYGGAPKGP
301: QLRELERGAD VVVATPGRLN DILEMNKVSL RQVSYLVLDE ADRMLDMGFE PQIRKIVKQI PPRRQTLMYT ATWPKEVRKI ASDLLNNPVQ VNIGNTDQLV
401: ANKSITQHVE VIPHMEKSRR LDQILRSQDP GSKIIIFCST KRMCDQLARN LSRQYGASAI HGDKSQAERD SVLNDFRSGR CPVLVATDVA ARGLDIKDIR
501: IVVNYDFPTG VEDYVHRIGR TGRAGATGSA YTFFGDQDSK YASELVKILE GANQSVPPQL KEMALRGGYG GRSRRWASSD DSYGSQGYGA KRSTDSFKNS
601: SFGNQAGGGS SFHSSFHNSS SGNQFGDTTS FHASYGNSSQ NNQTGDNPSF PPSSSNNQSG DGLSFHERFY GSRGRDESRS NNDGFRARSR SPGKPVEVSN
701: W

Best Arabidopsis Sequence Match ( AT3G01540.1 )
(BLAST)

001: MAATAAASVV RYAPEDHTLP KPWKGLIDDR TGYLYFWNPE TNVTQYEKPT PSLPPKFSPA VSVSSSVQVQ QTDAYAPPKD DDKYSRGSER VSRFSEGGRS
101: GPPYSNGAAN GVGDSAYGAA STRVPLPSSA PASELSPEAY SRRHEITVSG GQVPPPLMSF EATGFPPELL REVLSAGFSA PTPIQAQSWP IAMQGRDIVA
201: IAKTGSGKTL GYLIPGFLHL QRIRNDSRMG PTILVLSPTR ELATQIQEEA VKFGRSSRIS CTCLYGGAPK GPQLRDLERG ADIVVATPGR LNDILEMRRI
301: SLRQISYLVL DEADRMLDMG FEPQIRKIVK EIPTKRQTLM YTATWPKGVR KIAADLLVNP AQVNIGNVDE LVANKSITQH IEVVAPMEKQ RRLEQILRSQ
401: EPGSKVIIFC STKRMCDQLT RNLTRQFGAA AIHGDKSQPE RDNVLNQFRS GRTPVLVATD VAARGLDVKD IRAVVNYDFP NGVEDYVHRI GRTGRAGATG
501: QAFTFFGDQD SKHASDLIKI LEGANQRVPP QIREMATRGG GGMNKFSRWG PPSGGRGRGG DSGYGGRGSF ASRDRSSNGW GRERERSRSP ERFNRAPPPS
601: STGSPPRSFH ETMMMKHR

Arabidopsis Description

RH14DEAD-box ATP-dependent RNA helicase 14 [Source:UniProtKB/Swiss-Prot;Acc:Q8H136]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.