Factsheet for Zm00001d007757_P004

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007755_P001	Maize	plastid	94.71	96.91
KXG34634	Sorghum	plastid	92.75	95.05
Os07t0202100-01	Rice	nucleus	83.38	86.52
GSMUA_Achr8P15350_001	Banana	plastid	67.82	75.72
GSMUA_Achr6P29700_001	Banana	plastid	64.05	73.36
GSMUA_Achr5P14880_001	Banana	cytosol, plastid	66.77	72.94
Zm00001d048924_P001	Maize	plasma membrane	64.5	70.23
GSMUA_Achr4P17320_001	Banana	plastid	51.06	66.27
GSMUA_Achr9P25390_001	Banana	mitochondrion	42.45	62.72
Zm00001d036897_P001	Maize	extracellular	48.34	52.12
Zm00001d039452_P002	Maize	cytosol	27.49	32.91
Zm00001d019449_P004	Maize	nucleus	24.92	32.48
Zm00001d042416_P002	Maize	extracellular, plasma membrane	29.76	30.88
Zm00001d008725_P003	Maize	cytosol	30.36	29.0
Zm00001d039673_P002	Maize	cytosol	30.21	28.53
Zm00001d047502_P001	Maize	extracellular	25.53	27.35
Zm00001d011155_P012	Maize	nucleus	31.42	26.56
Zm00001d013453_P001	Maize	nucleus	28.55	25.75
Zm00001d033704_P007	Maize	extracellular	28.7	25.75
Zm00001d044510_P002	Maize	mitochondrion	31.12	25.69
Zm00001d047633_P002	Maize	nucleus	29.46	25.39
Zm00001d028898_P011	Maize	cytosol	29.31	25.19
Zm00001d024533_P001	Maize	nucleus	28.85	17.93
Zm00001d048632_P001	Maize	cytosol	34.44	16.5
Zm00001d007719_P010	Maize	cytosol	32.78	16.04

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1D6F8K4	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	ProteinID:ONM27508.1
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF363	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
UniParc:UPI000842983F	EnsemblPlantsGene:Zm00001d007757	EnsemblPlants:Zm00001d007757_P004	EnsemblPlants:Zm00001d007757_T004	SEG:seg	:

Description

DEAD-box ATP-dependent RNA helicase 52

Coordinates

chr2:+:238996301..239001506

Molecular Weight (calculated)

70264.7 Da

IEP (calculated)

9.106

GRAVY (calculated)

-0.386

Length

662 amino acids

Sequence
(BLAST)

001: MRSSWADSVA NAEESAPATA AANGSVANHS NSRPTRSSYV PPHLRGRSAG AAVGAQAGSV APAQGGPLPL AAAQPSGQGA VVGGPRWAGI VNGGGGGSVG
101: APRQGYGGGG GGGGRGAWNS RPGGWDRRDR EPDPFAKAEA EEVDFDGQEN TGINFDAYED IPVETSGHDV PAPVNTFAEI DLGDALNENI RRCKYVKPTP
201: VQRYAIPISI AGRDLMACAQ TGSGKTAAFC FPIISGILKS PKPHQRSRST RTACPLALIL SPTRELSVQI HEEARKFAYQ TGVRVVVAYG GAPITNQLRE
301: LERGVEILVA TPGRLMDLLE RARVSLQMIK YLALDEADRM LDMGFEPQIR KIVEGMDMPQ RGERQTMLFS ATFPKEIQRM AADFLADYIF LAVGRVGSST
401: DLIVQRVEFV LDSDKRSYLM DLIHAQKANG THGKVLYFFR ICYVPKSNQI GLKHALTLVF VETKRGADAL EDWLFRNGFP ATSIHGDRTQ QEREHALRSF
501: KSGATPILVA TDVAARGLDI PHVAHVINFD LPNDIDDYVH RIGRTGRAGK SGLATAFFNE SNTTLARPLS DLMKEANQEV PKWLDGYAAR SAYGGGGGRN
601: RRQGSGARFG GRDFRRDRGS GGSYGGGGGG GGGYGGSSGY GGAYGGGGSS GYGGGQSTSS WD

Best Arabidopsis Sequence Match ( AT2G42520.1 )
(BLAST)

001: MSASWADVAD SENTGSGSSN QNSHPSRPAY VPPHLRNRPA ASEPVAPLPA NDRVGYGGPP SGSRWAPGGS GVGVGGGGGY RADAGRPGSG SGYGGRGGGG
101: WNNRSGGWDR REREVNPFEN DDSEPEPAFT EQDNTVINFD AYEDIPIETS GDNVPPPVNT FAEIDLGEAL NLNIRRCKYV KPTPVQRHAI PILLEGRDLM
201: ACAQTGSGKT AAFCFPIISG IMKDQHVQRP RGSRTVYPLA VILSPTRELA SQIHDEAKKF SYQTGVKVVV AYGGTPINQQ LRELERGVDI LVATPGRLND
301: LLERARVSMQ MIRFLALDEA DRMLDMGFEP QIRKIVEQMD MPPRGVRQTL LFSATFPREI QRLAADFLAN YIFLAVGRVG SSTDLIVQRV EFVLDSDKRS
401: HLMDLLHAQR ENGIQGKQAL TLVFVETKRG ADSLENWLCI NGFPATSIHG DRTQQEREVA LKAFKSGRTP ILVATDVAAR GLDIPHVAHV VNFDLPNDID
501: DYVHRIGRTG RAGKSGLATA FFNDGNTSLA RPLAELMQEA NQEVPEWLTR YASRSSFGGG KNRRSGGRFG GRDFRREGSF GSGRGGYGGG GGGYGGGGGY
601: GGGGGYGGGG GYGGGYGGAS SGGYGGEPPS AWD

Arabidopsis Description

RH37DEAD-box ATP-dependent RNA helicase 37 [Source:UniProtKB/Swiss-Prot;Acc:Q84W89]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.