Factsheet for Zm00001d019449_P004

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER96257	Sorghum	cytosol	96.26	95.51
Os07t0301200-01	Rice	cytosol	84.06	83.4
HORVU5Hr1G037290.3	Barley	nucleus	82.68	79.25
TraesCS5D01G125100.1	Wheat	nucleus	82.87	78.84
TraesCS5B01G120500.1	Wheat	nucleus	82.28	78.72
TraesCS5A01G114400.1	Wheat	nucleus	82.87	78.69
GSMUA_Achr11P...	Banana	nucleus	75.0	66.03
KRH39630	Soybean	nucleus	69.29	65.55
KRH74291	Soybean	nucleus	68.9	65.18
CDY65864	Canola	nucleus	68.11	64.79
CDY66221	Canola	nucleus	67.52	63.99
Bra023227.1-P	Field mustard	nucleus	68.11	63.72
AT1G31970.1	Thale cress	cytosol	67.32	63.69
Solyc08g076200.2.1	Tomato	nucleus	68.5	62.93
PGSC0003DMT400024026	Potato	nucleus	68.9	62.84
CDY41747	Canola	nucleus	66.73	62.78
Bra035518.1-P	Field mustard	nucleus	65.55	62.13
VIT_02s0109g00380.t01	Wine grape	cytosol	71.46	57.8
CDX84112	Canola	nucleus	29.13	49.33
Zm00001d039452_P002	Maize	cytosol	38.39	35.26
Zm00001d042416_P002	Maize	extracellular, plasma membrane	38.19	30.41
Zm00001d036897_P001	Maize	extracellular	34.25	28.34
Zm00001d048924_P001	Maize	plasma membrane	33.27	27.8
Zm00001d007755_P001	Maize	plastid	32.28	25.35
Zm00001d008725_P003	Maize	cytosol	34.25	25.11
Zm00001d007757_P004	Maize	plastid	32.48	24.92
Zm00001d047502_P001	Maize	extracellular	30.32	24.92
Zm00001d039673_P002	Maize	cytosol	34.25	24.82
Zm00001d013453_P001	Maize	nucleus	33.07	22.89
Zm00001d033704_P007	Maize	extracellular	33.07	22.76
Zm00001d011155_P012	Maize	nucleus	35.04	22.73
Zm00001d044510_P002	Maize	mitochondrion	35.24	22.32
Zm00001d028898_P011	Maize	cytosol	33.27	21.95
Zm00001d047633_P002	Maize	nucleus	33.07	21.88
Zm00001d024533_P001	Maize	nucleus	34.45	16.43
Zm00001d007719_P010	Maize	cytosol	36.22	13.6
Zm00001d048632_P001	Maize	cytosol	35.43	13.02

Protein Annotations

EntrezGene:100383160	Gene3D:3.40.50.300	MapMan:35.1	EMBL:BT066418	UniProt:C0PDP9	ncoils:Coil
InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	ProteinID:ONM52912.1	ProteinID:ONM52914.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF215
InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000195C911
EnsemblPlantsGene:Zm00001d019449	EnsemblPlants:Zm00001d019449_P004	EnsemblPlants:Zm00001d019449_T004	SEG:seg	:	:

Description

DEAD-box ATP-dependent RNA helicase 5

Coordinates

chr7:+:34337921..34346938

Molecular Weight (calculated)

55304.9 Da

IEP (calculated)

9.265

GRAVY (calculated)

-0.267

Length

508 amino acids

Sequence
(BLAST)

001: MGRNLPAEQV EAPRSSKMDK KRKKDKKRKL AAEAEEEAAV TATVETVKSS KKKRVENEPG AGAVEAENGA EKTVAVTGKG SEDPKYAPLR SFSAAELPSQ
101: VLECCSAFAR PSPIQAHAWP FLLDGRDFIG IAATGSGKTI AFGVPALMHI RKKVGGKAGK KAVPRCLVLS PTRELAQQIA DVLSEAGAPC GIKSVCLYGG
201: TKKEPQISAL KSGVDIVIGT PGRMKDLIEM GVCCLNEVSF VVLDEADRML DLGFEPEVRA ILSQTSSVRQ MVMFSATWPL AVHKLAQEFM DPNPIKVVIG
301: SEDLAANHDV MQIVEVLDDR TRDSRLLALL DKYHQAQSNR VLVFVLYKKE AARVETMLQR RGWKAVSVHG DKAQHDRTKA LSLFKEGKCP LMIATDVASR
401: GLDIPDVEVV INYSYPLTTE DYVHRIGRTG RAGKKGVAHT FFTQANKALA GELVNVLREA DQVVPPALMK FGTHVKKKES KIYGSHFKEL TADAPKSTKI
501: TFGDSDED

Best Arabidopsis Sequence Match ( AT1G31970.1 )
(BLAST)

001: MAGQKQELPV SGEPLAVESP MTNKKKKKSK KNKHTEENHE VEEVPQEVTN GVEEELSNKE KKKKRKREEK ESEKNKKKDV PEKKLEAEDL GEGESEQQKV
101: VVTGKGVEEA KYAALKTFAE SNLPENVLDC CKTFEKPSPI QSHTWPFLLD GRDLIGIAKT GSGKTLAFGI PAIMHVLKKN KKIGGGSKKV NPTCLVLSPT
201: RELAVQISDV LREAGEPCGL KSICVYGGSS KGPQISAIRS GVDIVIGTPG RLRDLIESNV LRLSDVSFVV LDEADRMLDM GFEEPVRFIL SNTNKVRQMV
301: MFSATWPLDV HKLAQEFMDP NPIKVIIGSV DLAANHDVMQ IIEVLDERAR DQRLIALLEK YHKSQKNRVL VFALYKVEAE RLERFLQQRG WKAVSIHGNK
401: AQSERTRSLS LFKEGSCPLL VATDVAARGL DIPDVEVVIN YTFPLTTEDY VHRIGRTGRA GKKGVAHTFF TPLNKGLAGE LVNVLREAGQ VVPADLLKFG
501: THVKKKESKL YGAHFKEIAA DAPKATKITF DNSDDED

Arabidopsis Description

RH5STRS1 [Source:UniProtKB/TrEMBL;Acc:A0A178W5E1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.