Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES14596 | Sorghum | nucleus | 95.49 | 95.76 |
| Os08t0159900-01 | Rice | extracellular, nucleus | 83.19 | 84.46 |
| TraesCS7D01G294500.1 | Wheat | nucleus | 79.25 | 82.18 |
| TraesCS7B01G187000.1 | Wheat | nucleus | 81.78 | 81.94 |
| HORVU0Hr1G020490.1 | Barley | nucleus | 81.69 | 81.61 |
| TraesCS7A01G298800.3 | Wheat | nucleus | 81.6 | 81.06 |
| TraesCS2D01G149500.1 | Wheat | nucleus | 59.25 | 76.48 |
| CDY72529 | Canola | cytosol | 41.97 | 71.75 |
| TraesCS2B01G170700.1 | Wheat | nucleus | 67.98 | 71.19 |
| HORVU2Hr1G025790.1 | Barley | nucleus | 66.01 | 68.99 |
| AT3G09620.2 | Thale cress | nucleus | 57.37 | 61.72 |
| KRH77709 | Soybean | nucleus | 62.82 | 60.6 |
| VIT_03s0038g04130.t01 | Wine grape | nucleus | 65.16 | 60.51 |
| KRH27757 | Soybean | nucleus | 62.72 | 60.34 |
| CDY44720 | Canola | nucleus | 48.83 | 60.19 |
| PGSC0003DMT400011665 | Potato | nucleus | 62.82 | 60.0 |
| Solyc12g098700.1.1 | Tomato | nucleus | 64.23 | 59.63 |
| Bra029779.1-P | Field mustard | nucleus | 49.48 | 59.41 |
| CDY31513 | Canola | nucleus | 61.03 | 58.77 |
| CDY41597 | Canola | nucleus | 42.44 | 58.47 |
| Bra025856.1-P | Field mustard | nucleus | 64.13 | 58.33 |
| AT1G20920.3 | Thale cress | nucleus | 62.82 | 57.38 |
| GSMUA_Achr10P... | Banana | cytosol | 53.62 | 57.04 |
| Zm00001d039452_P002 | Maize | cytosol | 19.44 | 37.43 |
| Zm00001d028898_P011 | Maize | cytosol | 24.98 | 34.55 |
| Zm00001d019449_P004 | Maize | nucleus | 16.43 | 34.45 |
| Zm00001d047633_P002 | Maize | nucleus | 24.69 | 34.24 |
| Zm00001d042416_P002 | Maize | extracellular, plasma membrane | 19.81 | 33.07 |
| Zm00001d047502_P001 | Maize | extracellular | 18.31 | 31.55 |
| Zm00001d048924_P001 | Maize | plasma membrane | 17.18 | 30.1 |
| Zm00001d007755_P001 | Maize | plastid | 18.03 | 29.68 |
| Zm00001d007757_P004 | Maize | plastid | 17.93 | 28.85 |
| Zm00001d036897_P001 | Maize | extracellular | 16.34 | 28.34 |
| Zm00001d033704_P007 | Maize | extracellular | 19.34 | 27.91 |
| Zm00001d013453_P001 | Maize | nucleus | 19.15 | 27.79 |
| Zm00001d008725_P003 | Maize | cytosol | 17.84 | 27.42 |
| Zm00001d039673_P002 | Maize | cytosol | 17.65 | 26.82 |
| Zm00001d011155_P012 | Maize | nucleus | 17.46 | 23.75 |
| Zm00001d044510_P002 | Maize | mitochondrion | 17.75 | 23.57 |
| Zm00001d007719_P010 | Maize | cytosol | 18.97 | 14.93 |
| Zm00001d048632_P001 | Maize | cytosol | 19.06 | 14.69 |
Protein Annotations
| MapMan:16.4.7.1.2 | Gene3D:3.40.50.300 | ProteinID:AQK41443.1 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0016787 |
| InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | UniProt:K7THT7 |
| InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 |
| PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF25 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 |
| SMART:SM00490 | SUPFAM:SSF52540 | UniParc:UPI0002219123 | EnsemblPlantsGene:Zm00001d024533 | EnsemblPlants:Zm00001d024533_P001 | EnsemblPlants:Zm00001d024533_T001 |
| SEG:seg | : | : | : | : | : |
Description
Putative DEAD-box ATP-dependent RNA helicase family protein
Coordinates
chr10:+:76836394..76839591
Molecular Weight (calculated)
119788.0 Da
IEP (calculated)
5.844
GRAVY (calculated)
-0.987
Length
1065 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGSGDDERST SKHHHRDKDK DRDRSSSRHH RDKDRDRERS SRHHRDDGDR DRDRHHRDKD RDREERKERE REERKARERE ERKAREREER EERDREKEKE
0101: KEKERARRRE ERDREERESS RRRGDADGEE DDDRDRKRRR RSSHHHHRDP EPEPEPASRE EEEVDAEEAE RRRQRKKEED MEAEQQRLDD EMERRRRRVK
0201: EWQEKRREQQ QQDGSVASGA SAAVAAEADG AKAGKKWTLD GEESDEEEDK EDGKKAEGNG GAGDMDVGLP SGNGDANGGA EMEEDEIDPL DAFMNSMVLP
0301: EVAKLESAAV AMDTAPAAGA DGKNGKSSKD VISNGDKKGS RKATGRIMQG DDSDSDYDDA DDDGAGEDDE DDEEFIKRVK KTKAEKLAIV DHSKIDYQPF
0401: RKNFYIEVKD ITKMTSEEVV DYRKHLELKV HGKDVPKPIK TWVQSGLTSK LLDTIKKLGF EKPMPIQTQA LPIIMSGRDC IGIAKTGSGK TLAFVLPMLR
0501: HVKDQPPVVP GDGPIGLIMA PTRELVVQIH SDIKKFSKVL GINCVAIYGG SGVAQQISEL KRGAEIVVCT PGRMIDILCT SSGKITNLRR VTFLVMDEAD
0601: RMFDMGFEPQ ITRIVQNTRP DRQTVLFSAT FPRQVEILAR KVLTKPVEIQ VGGRSVVNKD ITQLVEVRPD TERFFRLLEL LGEWYVKGKI LVFVHSQDKC
0701: DSLLKDLFQH GYPCLSLHGG KDQTDRESTI ADFKSNVCSL LIATSVAARG LDVKELELVV NYDVPNHYED YVHRVGRTGR AGRKGFAVTF ISDEDERYAT
0801: DLVKALELSE QAVPQDLKAL ADRFMAKVKQ GTEQAHGTGY GGSGFKFNEE EDEARKTAKK AQAREYGYEE DKSDSDSDDE GGVRKAGGDL AAQAIANAHA
0901: AAALVANKAA NNANQQIPGS ATAPLIPLLT ASNQQNDEAT ARALQAAMNL QQNLARIQAH AVPEHYEAEL EINDFPQNAR WRITHKETLA PIQDWTGAAI
1001: TTRGTYIPQG KIVGANERKL YLFIEGPTES SVKKAKAELK RVLEDCANQA LNLPGSAQTG KYSVI
0101: KEKERARRRE ERDREERESS RRRGDADGEE DDDRDRKRRR RSSHHHHRDP EPEPEPASRE EEEVDAEEAE RRRQRKKEED MEAEQQRLDD EMERRRRRVK
0201: EWQEKRREQQ QQDGSVASGA SAAVAAEADG AKAGKKWTLD GEESDEEEDK EDGKKAEGNG GAGDMDVGLP SGNGDANGGA EMEEDEIDPL DAFMNSMVLP
0301: EVAKLESAAV AMDTAPAAGA DGKNGKSSKD VISNGDKKGS RKATGRIMQG DDSDSDYDDA DDDGAGEDDE DDEEFIKRVK KTKAEKLAIV DHSKIDYQPF
0401: RKNFYIEVKD ITKMTSEEVV DYRKHLELKV HGKDVPKPIK TWVQSGLTSK LLDTIKKLGF EKPMPIQTQA LPIIMSGRDC IGIAKTGSGK TLAFVLPMLR
0501: HVKDQPPVVP GDGPIGLIMA PTRELVVQIH SDIKKFSKVL GINCVAIYGG SGVAQQISEL KRGAEIVVCT PGRMIDILCT SSGKITNLRR VTFLVMDEAD
0601: RMFDMGFEPQ ITRIVQNTRP DRQTVLFSAT FPRQVEILAR KVLTKPVEIQ VGGRSVVNKD ITQLVEVRPD TERFFRLLEL LGEWYVKGKI LVFVHSQDKC
0701: DSLLKDLFQH GYPCLSLHGG KDQTDRESTI ADFKSNVCSL LIATSVAARG LDVKELELVV NYDVPNHYED YVHRVGRTGR AGRKGFAVTF ISDEDERYAT
0801: DLVKALELSE QAVPQDLKAL ADRFMAKVKQ GTEQAHGTGY GGSGFKFNEE EDEARKTAKK AQAREYGYEE DKSDSDSDDE GGVRKAGGDL AAQAIANAHA
0901: AAALVANKAA NNANQQIPGS ATAPLIPLLT ASNQQNDEAT ARALQAAMNL QQNLARIQAH AVPEHYEAEL EINDFPQNAR WRITHKETLA PIQDWTGAAI
1001: TTRGTYIPQG KIVGANERKL YLFIEGPTES SVKKAKAELK RVLEDCANQA LNLPGSAQTG KYSVI
0001: MEVEKSKYRS EDLDVVEEEA DLKKSRRDRD RSNERKKDKG SEKRREKDRR KKRVKSSDSE DDYDRDDDEE REKRKEKERE RRRRDKDRVK RRSERRKSSD
0101: SEDDVEEEDE RDKRRVNEKE RGHREHERDR GKDRKRDRER EERKDKERER EKDRERRERE REEREKERVK ERERREREDG ERDRREREKE RGSRRNRERE
0201: RSREVGNEES DDDVKRDLKR RRKEGGERKE KEREKSVGRS SRHEDSPKRK SVEDNGEKKE KKTREEELED EQKKLDEEVE KRRRRVQEWQ ELKRKKEEAE
0301: SESKGDADGN EPKAGKAWTL EGESDDEEGH PEEKSETEMD VDEETKPEND GDAKMVDLEN ETAATVSESG GDGAVDEEEI DPLDAFMNTM VLPEVEKFCN
0401: GAPPPAVNDG TLDSKMNGKE SGDRPKKGFN KALGRIIQGE DSDSDYSEPK NDDDPSLDED DEEFMKRVKK TKAEKLSLVD HSKIEYEPFR KNFYIEVKDI
0501: SRMTQEEVNT YRKELELKVH GKDVPRPIKF WHQTGLTSKI LDTMKKLNYE KPMPIQTQAL PIIMSGRDCI GVAKTGSGKT LGFVLPMLRH IKDQPPVEAG
0601: DGPIGLVMAP TRELVQQIHS DIRKFSKPLG IRCVPVYGGS GVAQQISELK RGTEIVVCTP GRMIDILCTS SGKITNLRRV TFLVMDEADR MFDMGFEPQI
0701: TRIIQNIRPE RQTVLFSATF PRQVETLARK VLNKPVEIQV GGRSVVNKDI TQLVEVRPES DRFLRLLELL GEWSEKGKIL VFVQSQEKCD ALYRDMIKSS
0801: YPCLSLHGGK DQTDRESTIS DFKNDVCNLL IATSVAARGL DVKELELVVN FDAPNHYEDY VHRVGRTGRA GRKGCAVTFI SEDDAKYAPD LVKALELSEQ
0901: PVPDDLKALA DGFMVKVKQG IEQAHGTGYG GSGFKFNEEE EEVRKAAKKA QAKEYGFEED KSDSEDENDV VRKAGGGEIS QQQATFAQIA AIAAAAKAAA
1001: AAPVSAPVTA NQLLANGGGL AAMPGVLPVT VPTLPSEGAG RAAAMVAAMN LQHNLAKIQA DAMPEHYEAE LEINDFPQNA RWKVTHKETL GPISEWTGAA
1101: ITTRGQFYPT GRIPGPGERK LYLFIEGPSE KSVKHAKAEL KRVLEDITNQ AMSSLPGGAS GRYSVL
0101: SEDDVEEEDE RDKRRVNEKE RGHREHERDR GKDRKRDRER EERKDKERER EKDRERRERE REEREKERVK ERERREREDG ERDRREREKE RGSRRNRERE
0201: RSREVGNEES DDDVKRDLKR RRKEGGERKE KEREKSVGRS SRHEDSPKRK SVEDNGEKKE KKTREEELED EQKKLDEEVE KRRRRVQEWQ ELKRKKEEAE
0301: SESKGDADGN EPKAGKAWTL EGESDDEEGH PEEKSETEMD VDEETKPEND GDAKMVDLEN ETAATVSESG GDGAVDEEEI DPLDAFMNTM VLPEVEKFCN
0401: GAPPPAVNDG TLDSKMNGKE SGDRPKKGFN KALGRIIQGE DSDSDYSEPK NDDDPSLDED DEEFMKRVKK TKAEKLSLVD HSKIEYEPFR KNFYIEVKDI
0501: SRMTQEEVNT YRKELELKVH GKDVPRPIKF WHQTGLTSKI LDTMKKLNYE KPMPIQTQAL PIIMSGRDCI GVAKTGSGKT LGFVLPMLRH IKDQPPVEAG
0601: DGPIGLVMAP TRELVQQIHS DIRKFSKPLG IRCVPVYGGS GVAQQISELK RGTEIVVCTP GRMIDILCTS SGKITNLRRV TFLVMDEADR MFDMGFEPQI
0701: TRIIQNIRPE RQTVLFSATF PRQVETLARK VLNKPVEIQV GGRSVVNKDI TQLVEVRPES DRFLRLLELL GEWSEKGKIL VFVQSQEKCD ALYRDMIKSS
0801: YPCLSLHGGK DQTDRESTIS DFKNDVCNLL IATSVAARGL DVKELELVVN FDAPNHYEDY VHRVGRTGRA GRKGCAVTFI SEDDAKYAPD LVKALELSEQ
0901: PVPDDLKALA DGFMVKVKQG IEQAHGTGYG GSGFKFNEEE EEVRKAAKKA QAKEYGFEED KSDSEDENDV VRKAGGGEIS QQQATFAQIA AIAAAAKAAA
1001: AAPVSAPVTA NQLLANGGGL AAMPGVLPVT VPTLPSEGAG RAAAMVAAMN LQHNLAKIQA DAMPEHYEAE LEINDFPQNA RWKVTHKETL GPISEWTGAA
1101: ITTRGQFYPT GRIPGPGERK LYLFIEGPSE KSVKHAKAEL KRVLEDITNQ AMSSLPGGAS GRYSVL
Arabidopsis Description
RH42DEAD-box ATP-dependent RNA helicase 42 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0U8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.