Factsheet for Zm00001d033704_P007

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013453_P001	Maize	nucleus	96.34	96.87
TraesCS4A01G270200.1	Wheat	nucleus	90.11	91.47
TraesCS4B01G043900.1	Wheat	nucleus	90.11	91.22
Os03t0708600-02	Rice	nucleus	89.97	90.22
KXG37746	Sorghum	nucleus	98.24	89.73
HORVU4Hr1G007110.17	Barley	mitochondrion	90.24	86.49
TraesCS4D01G041400.1	Wheat	nucleus	90.65	83.52
GSMUA_Achr3P01410_001	Banana	nucleus	59.62	83.49
KRH51212	Soybean	nucleus	75.75	79.74
KRH01937	Soybean	nucleus	76.02	79.46
PGSC0003DMT400043101	Potato	nucleus	75.88	79.21
CDY53786	Canola	nucleus	63.01	78.81
CDX84672	Canola	cytosol	47.43	78.3
VIT_09s0054g01810.t01	Wine grape	cytosol	74.8	77.86
TraesCS6B01G364400.1	Wheat	nucleus, plastid	68.43	77.81
Solyc02g081290.2.1	Tomato	nucleus	68.83	77.79
HORVU6Hr1G080730.2	Barley	cytosol	34.42	77.68
VIT_03s0038g00010.t01	Wine grape	cytosol	74.93	77.67
TraesCS6B01G364300.1	Wheat	nucleus, plastid	68.29	77.66
Bra021872.1-P	Field mustard	nucleus	68.97	77.24
CDY37696	Canola	nucleus	60.57	75.76
AT2G33730.1	Thale cress	nucleus	74.25	74.76
PGSC0003DMT400024330	Potato	cytosol	66.53	73.39
CDX79541	Canola	nucleus	62.47	73.29
Solyc02g068190.1.1	Tomato	cytosol, nucleus	65.45	72.96
Zm00001d019449_P004	Maize	nucleus	22.76	33.07
Zm00001d039452_P002	Maize	cytosol	24.53	32.73
Zm00001d048924_P001	Maize	plasma membrane	25.07	30.43
Zm00001d036897_P001	Maize	extracellular	24.93	29.97
Zm00001d007755_P001	Maize	plastid	25.88	29.52
Zm00001d007757_P004	Maize	plastid	25.75	28.7
Zm00001d047502_P001	Maize	extracellular	23.44	27.99
Zm00001d042416_P002	Maize	extracellular, plasma membrane	23.98	27.74
Zm00001d008725_P003	Maize	cytosol	24.25	25.83
Zm00001d028898_P011	Maize	cytosol	26.69	25.58
Zm00001d047633_P002	Maize	nucleus	26.29	25.26
Zm00001d039673_P002	Maize	cytosol	23.58	24.82
Zm00001d044510_P002	Maize	mitochondrion	25.61	23.57
Zm00001d011155_P012	Maize	nucleus	24.66	23.24
Zm00001d024533_P001	Maize	nucleus	27.91	19.34
Zm00001d007719_P010	Maize	cytosol	24.66	13.45
Zm00001d048632_P001	Maize	cytosol	24.66	13.17

Protein Annotations

MapMan:16.4.7.1.3	Gene3D:3.40.50.300	UniProt:A0A1D6L1N9	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
ProteinID:ONM08442.1	ProteinID:ONM08443.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF23	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000843E36C	EnsemblPlantsGene:Zm00001d033704
EnsemblPlants:Zm00001d033704_P007	EnsemblPlants:Zm00001d033704_T007	SEG:seg	:	:	:

Description

DEAD-box ATP-dependent RNA helicase 21

Coordinates

chr1:-:271708263..271710844

Molecular Weight (calculated)

84520.9 Da

IEP (calculated)

9.320

GRAVY (calculated)

-0.935

Length

738 amino acids

Sequence
(BLAST)

001: MKRSADAMTE PAKPVFLTKA ERERLALERR QAAVSDQRRT ALDLLQSLPR APPPPPPSGA PPSGSNPAPR DSSNSHRDSS DRDRDRDRDR ERRRDDDSRR
101: DRDRDRDRDR DRDRDRDDSS RRDRDRDRDR RDRDRDRDRD RGDRGDRERD RLEKMAERER EKELDAIKEQ YLGSKKPKKR VIKPSEKFRF SFDWENTEDT
201: SRDMNALYQS PHEARLLFGR GFLAGIDRRE QKKAAAAHEK ETRAELRRKA GVEDRPEDDA VDKKKAAAAE MYDAFDMRVD RHWSEKALEE MTERDWRIFR
301: EDFNISYKGS RIPRPMRKWS ESKLGTELLR AIDKAGYEKP SPIQMAAIPL GLQQRDVIGI AETGSGKTAA FVLPMLSYIT RLPPISEENE AEGPYAVVMA
401: PTRELAQQIE EETVKFATYL GIKVVSIVGG QSIEEQGFKI RQGCEIVIAT PGRLLDCLER RYAVLNQCNY VVLDEADRMI DMGFEPQVVG VLDAMPSSNL
501: KPENEDEELD EKRIYRTTYM FSATMPPAVE RLARKYLRNP VVVTIGTAGK ATDLITQNVI MVKESEKMPR LQKILTDLGD KTAIVFCNTK KTADMRAKDL
601: DKSGFRVTTL HGGKSQDQRE ISLDGFRNRR FNVLVATDVA GRGIDIPDVA HVINYEMPSS VDTYTHRIGR TGRAGKKGVA TSFLTLENTD IFFDLKQMLI
701: QSNSPVPPEL ARHEASKFKP GSIPDRPPRR NDTVFANH

Best Arabidopsis Sequence Match ( AT2G33730.1 )
(BLAST)

001: MKRTINEVVG STSVNTLDSS IAKKPVFLTK KQREELALKR RQDQISEQRV RREQLGRPEP ETEDVSNGDT NRDKDRDRDR DRDRERDRDR ERDRGRDRDR
101: DRDRDRDRDR ERERDRERDR RERDREPDRR NREKEREEEV KAREKARVEK LVEREKEKEL DAIKEQYLGG KKPKKRVIRP SEKFRFSFDW ENTEDTSRDM
201: NVLYQNPHEA QLLFGRGFRA GMDRREQKKQ AAKHEKEMRD EIRKKDGIVE KPEEAAAQRV REEAADTYDS FDMRVDRHWS DKRLEEMTER DWRIFREDFN
301: ISYKGSRIPR PMRSWEESKL TSELLKAVER AGYKKPSPIQ MAAIPLGLQQ RDVIGIAETG SGKTAAFVLP MLAYISRLPP MSEENETEGP YAVVMAPTRE
401: LAQQIEEETV KFAHYLGFRV TSIVGGQSIE EQGLKITQGC EIVIATPGRL IDCLERRYAV LNQCNYVVLD EADRMIDMGF EPQVAGVLDA MPSSNLKPEN
501: EEEELDEKKI YRTTYMFSAT MPPGVERLAR KYLRNPVVVT IGTAGKTTDL ISQHVIMMKE SEKFFRLQKL LDELGEKTAI VFVNTKKNCD SIAKNLDKAG
601: YRVTTLHGGK SQEQREISLE GFRAKRYNVL VATDVVGRGI DIPDVAHVIN YDMPKHIEMY THRIGRTGRA GKSGVATSFL TLHDTEVFYD LKQMLVQSNS
701: AVPPELARHE ASRFKPGTVP DRPPRHSDTV YIN

Arabidopsis Description

RH21DEAD-box ATP-dependent RNA helicase 21 [Source:UniProtKB/Swiss-Prot;Acc:P93008]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.