Factsheet for VIT_09s0054g01810.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0038g00010.t01	Wine grape	cytosol	96.76	96.35
KRH01937	Soybean	nucleus	85.47	85.84
KRH51212	Soybean	nucleus	84.63	85.59
PGSC0003DMT400043101	Potato	nucleus	83.92	84.16
CDX84672	Canola	cytosol	52.19	82.77
GSMUA_Achr3P01410_001	Banana	nucleus	61.5	82.73
Solyc02g081290.2.1	Tomato	nucleus	76.16	82.7
CDY53786	Canola	nucleus	67.0	80.51
PGSC0003DMT400024330	Potato	cytosol	75.6	80.12
Solyc02g068190.1.1	Tomato	cytosol, nucleus	74.33	79.61
Bra021872.1-P	Field mustard	nucleus	73.62	79.21
AT2G33730.1	Thale cress	nucleus	80.25	77.63
CDY37696	Canola	nucleus	63.19	75.93
CDX79541	Canola	nucleus	67.0	75.52
TraesCS4A01G270200.1	Wheat	nucleus	76.73	74.83
Zm00001d033704_P007	Maize	extracellular	77.86	74.8
Zm00001d013453_P001	Maize	nucleus	77.43	74.8
TraesCS4B01G043900.1	Wheat	nucleus	76.73	74.62
Os03t0708600-02	Rice	nucleus	76.02	73.23
HORVU6Hr1G080730.2	Barley	cytosol	33.29	72.17
TraesCS6B01G364400.1	Wheat	nucleus, plastid	65.16	71.19
TraesCS6B01G364300.1	Wheat	nucleus, plastid	65.16	71.19
HORVU4Hr1G007110.17	Barley	mitochondrion	77.01	70.91
TraesCS1B01G445500.1	Wheat	cytosol	45.13	70.02
KXG37746	Sorghum	nucleus	78.14	68.56
HORVU1Hr1G083090.1	Barley	cytosol	24.12	68.13
TraesCS5B01G079300.1	Wheat	nucleus	68.97	68.01
TraesCS4D01G041400.1	Wheat	nucleus	76.73	67.92
HORVU3Hr1G031710.1	Barley	mitochondrion	24.96	67.82
TraesCS1A01G415500.1	Wheat	cytosol	60.51	66.61
HORVU1Hr1G091050.3	Barley	nucleus	54.44	64.55
OQU83862	Sorghum	nucleus	57.83	63.86
HORVU5Hr1G044620.1	Barley	cytosol, mitochondrion	29.9	55.79
VIT_09s0002g02100.t01	Wine grape	cytosol	24.82	34.17
VIT_06s0004g00850.t01	Wine grape	cytosol	18.19	33.77
VIT_06s0004g08160.t01	Wine grape	plastid	25.11	31.34
VIT_13s0156g00070.t01	Wine grape	cytosol	27.22	31.28
VIT_08s0007g07070.t01	Wine grape	cytosol, plastid	27.22	31.03
VIT_09s0002g08120.t01	Wine grape	cytosol	24.82	29.98
VIT_11s0016g05090.t01	Wine grape	cytosol	25.25	29.2
VIT_02s0109g00380.t01	Wine grape	cytosol	25.67	28.98
VIT_07s0005g01600.t01	Wine grape	cytosol	27.5	25.29
VIT_17s0000g09130.t01	Wine grape	cytosol	20.87	24.22
VIT_14s0066g01020.t01	Wine grape	cytosol	26.23	21.55
VIT_03s0038g04130.t01	Wine grape	nucleus	29.62	18.31
VIT_05s0020g00470.t01	Wine grape	cytosol	26.09	16.05

Protein Annotations

EntrezGene:100263263	wikigene:100263263	MapMan:16.4.7.1.3	Gene3D:3.40.50.300	EMBL:AM452053	ProteinID:CAN74342
ProteinID:CAN74342.1	ProteinID:CCB45008	ProteinID:CCB45008.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	UniProt:F6GYH2
EMBL:FN594972	GO:GO:0000166	GO:GO:0000375	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005682	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	GO:GO:0071013
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	EntrezGene:LOC100263263
wikigene:LOC100263263	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF23	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI00019840DD	ArrayExpress:VIT_09s0054g01810	EnsemblPlantsGene:VIT_09s0054g01810
EnsemblPlants:VIT_09s0054g01810.t01	RefSeq:XP_002270644	RefSeq:XP_002270644.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr9:-:22900656..22902827

Molecular Weight (calculated)

81075.5 Da

IEP (calculated)

9.147

GRAVY (calculated)

-0.804

Length

709 amino acids

Sequence
(BLAST)

001: MKRSIEEDIS TTIASTTTTN MKKPVFLTKA QREQLALQRR QEEIAEQKRC AEQQLLQARS SSANNSSHTA STNKPSDPSL DSRHHRSSRD RDRDRDRDRD
101: RDSERRNRDR EREEEAKVRG LARLEKLAER EREKELESIK EQYLGSKKPK KRVIKPSEKF RFSFDWENTE DTSRDMNSLY QNPHEAQLLF GRGFRAGMDR
201: REQKKLAAKN EKEMREEIRK KEGVEERPEE AAAQRQKEQA AELYDTFDMR VDRHWTEKKL EEMTERDWRI FREDFNVSYK GSKIPRPMRS WVESKLSPEL
301: LKAVERAGYK TPSPIQMAAI PLGLQQRDVI GIAETGSGKT AAFVLPMLTY ISRLPPISEE NEAEGPYAVV MAPTRELAQQ IEDETVKFAH YLGIKVVSIV
401: GGQSIEEQGF RIRQGCEVVI ATPGRLIDCL ERRYAVLNQC NYVVLDEADR MIDMGFEPQV VGVLDAMPSS NLKPENEDEE LDEKKIYRTT YMFSATMPPA
501: VERLARKYLR NPVVVTIGTA GKATDLITQH VIMVKGSEKM PKLQKLLDEL GDKTAIVFIN TKKSTDTLAK GLDKAGYRVT TLHGGKSQEQ REISLEGFRT
601: KRYNVLVATD VAGRGIDIPD VAHVINYDMP GNIEMYTHRI GRTGRAGKTG VATTFLTLHD SDVFYDLKQM LIQSNSPVPP ELARHEASKF KPGSIPDRPP
701: RRNDTVFAH

Best Arabidopsis Sequence Match ( AT2G33730.1 )
(BLAST)

001: MKRTINEVVG STSVNTLDSS IAKKPVFLTK KQREELALKR RQDQISEQRV RREQLGRPEP ETEDVSNGDT NRDKDRDRDR DRDRERDRDR ERDRGRDRDR
101: DRDRDRDRDR ERERDRERDR RERDREPDRR NREKEREEEV KAREKARVEK LVEREKEKEL DAIKEQYLGG KKPKKRVIRP SEKFRFSFDW ENTEDTSRDM
201: NVLYQNPHEA QLLFGRGFRA GMDRREQKKQ AAKHEKEMRD EIRKKDGIVE KPEEAAAQRV REEAADTYDS FDMRVDRHWS DKRLEEMTER DWRIFREDFN
301: ISYKGSRIPR PMRSWEESKL TSELLKAVER AGYKKPSPIQ MAAIPLGLQQ RDVIGIAETG SGKTAAFVLP MLAYISRLPP MSEENETEGP YAVVMAPTRE
401: LAQQIEEETV KFAHYLGFRV TSIVGGQSIE EQGLKITQGC EIVIATPGRL IDCLERRYAV LNQCNYVVLD EADRMIDMGF EPQVAGVLDA MPSSNLKPEN
501: EEEELDEKKI YRTTYMFSAT MPPGVERLAR KYLRNPVVVT IGTAGKTTDL ISQHVIMMKE SEKFFRLQKL LDELGEKTAI VFVNTKKNCD SIAKNLDKAG
601: YRVTTLHGGK SQEQREISLE GFRAKRYNVL VATDVVGRGI DIPDVAHVIN YDMPKHIEMY THRIGRTGRA GKSGVATSFL TLHDTEVFYD LKQMLVQSNS
701: AVPPELARHE ASRFKPGTVP DRPPRHSDTV YIN

Arabidopsis Description

RH21DEAD-box ATP-dependent RNA helicase 21 [Source:UniProtKB/Swiss-Prot;Acc:P93008]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.