Factsheet for Os03t0708600-02

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G270200.1	Wheat	nucleus	89.13	90.23
TraesCS4B01G043900.1	Wheat	nucleus	89.13	89.99
Zm00001d033704_P007	Maize	extracellular	90.22	89.97
Zm00001d013453_P001	Maize	nucleus	88.72	88.96
HORVU4Hr1G007110.17	Barley	mitochondrion	89.27	85.32
TraesCS4D01G041400.1	Wheat	nucleus	89.4	82.15
KXG37746	Sorghum	nucleus	89.95	81.93
GSMUA_Achr3P01410_001	Banana	nucleus	57.07	79.7
CDX84672	Canola	cytosol	47.42	78.08
KRH01937	Soybean	nucleus	74.46	77.62
KRH51212	Soybean	nucleus	73.64	77.32
CDY53786	Canola	nucleus	61.82	77.12
PGSC0003DMT400043101	Potato	nucleus	73.51	76.52
Bra021872.1-P	Field mustard	nucleus	68.07	76.02
VIT_09s0054g01810.t01	Wine grape	cytosol	73.23	76.02
VIT_03s0038g00010.t01	Wine grape	cytosol	73.51	75.98
TraesCS6B01G364400.1	Wheat	nucleus, plastid	66.71	75.65
TraesCS6B01G364300.1	Wheat	nucleus, plastid	66.58	75.5
HORVU6Hr1G080730.2	Barley	cytosol	33.29	74.92
Solyc02g081290.2.1	Tomato	nucleus	66.44	74.89
CDY37696	Canola	nucleus	59.38	74.07
AT2G33730.1	Thale cress	nucleus	73.64	73.94
CDX79541	Canola	nucleus	61.55	72.02
PGSC0003DMT400024330	Potato	cytosol	64.95	71.45
Solyc02g068190.1.1	Tomato	cytosol, nucleus	64.13	71.3
Os01t0197200-01	Rice	plasma membrane	24.18	36.03
Os02t0150100-02	Rice	cytosol	21.74	34.78
Os06t0602400-01	Rice	nucleus, plasma membrane	21.88	33.26
Os07t0301200-01	Rice	cytosol	22.69	32.62
Os11t0599500-00	Rice	nucleus, plasma membrane	25.95	30.66
Os01t0911100-01	Rice	nucleus, plastid	19.29	29.77
Os07t0202100-01	Rice	nucleus	25.54	29.47
Os03t0805200-01	Rice	plastid	25.41	29.36
Os06t0697200-00	Rice	cytosol	23.51	27.95
Os03t0308500-01	Rice	mitochondrion	26.22	25.06
Os01t0549400-01	Rice	nucleus	26.49	24.62
Os08t0154225-00	Rice	cytosol	19.57	24.2
Os01t0172200-01	Rice	cytosol	23.91	23.19
Os02t0150000-00	Rice	mitochondrion	5.03	21.39
Os08t0159900-01	Rice	extracellular, nucleus	26.63	18.68
Os08t0154200-01	Rice	cytosol, nucleus	0.41	1.4
Os01t0911000-01	Rice	nucleus	0.0	0.0

Protein Annotations

MapMan:16.4.7.1.3	Gene3D:3.40.50.300	EntrezGene:4333866	ProteinID:AAX95674.1	ProteinID:ABF98484.1	ProteinID:ABF98485.1
ProteinID:ABF98486.1	EMBL:AK069199	ProteinID:BAF12952.1	ProteinID:BAS85997.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom
ProteinID:EAZ28319.1	GO:GO:0000166	GO:GO:0000375	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005682	GO:GO:0005730	GO:GO:0005737
GO:GO:0006139	GO:GO:0006397	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009987
GO:GO:0010501	GO:GO:0016787	GO:GO:0071013	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	EnsemblPlantsGene:Os03g0708600	EnsemblPlants:Os03t0708600-02	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF23	UniProt:Q53RK8	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	UniParc:UPI00000A93EB	RefSeq:XP_015631547.1	RefSeq:XP_015631548.1	RefSeq:XP_015631549.1	SEG:seg

Description

RNA helicase 21DEAD-like helicase, N-terminal domain containing protein. (Os03t0708600-01);DEAD-like helicase, N-terminal domain containing protein. (Os03t0708600-02)

Coordinates

chr3:-:28568347..28571307

Molecular Weight (calculated)

84525.7 Da

IEP (calculated)

9.280

GRAVY (calculated)

-1.003

Length

736 amino acids

Sequence
(BLAST)

001: MKRAADGMEK PKFLTREERE KLALERRQAA VTDQRRSALD LLQSLPRPPP PPPPPLSNPP RDSSSSHHRD SSDRDRDRDR DRDRDRDRDR DRERRRDDDS
101: RRDRDRDRDR DRGDSSRRDR DRERGDRDRD RDRERGDRDR ERGDREKDRL EKMAEREREK ELDAIKEQYL GSKKPKKRVI KPSEKFRFSF DWENTEDTSR
201: DMNSLYQSPH EARLLYGRGF LAGIDRREQK KVAAAHEKET RAEQRRKAGL DDRPEDDAVD KKEADAAAKY DAFDMRVDRH WTQKSLDEMT ERDWRIFRED
301: FNISYKGSKV PRPMRKWSES KLGTELLRAV EKAGYKEPSP IQMASIPLGL QQRDVIGIAE TGSGKTAAFV LPMLSYITRL PPISEENEAE GPYAVVMAPT
401: RELAQQIEEE TVKFATYLGI KVVSIVGGQS IEEQGFKIRQ GCEVVIATPG RLLDCLERRY AVLNQCNYVV LDEADRMIDM GFEPQVVGVL DAMPSSNLKP
501: ENEDEELDAK TIYRTTYMFS ATMPPAVERL ARKYLRNPVV VTIGTAGKAT DLITQNVIMT KESEKMSRLQ KILTDLGDKP AIVFCNTKKS ADARAKDLDK
601: AGFRVTTLHG GKSQEQRETS LDGFRNRRFT VLVATDVAGR GIDIPDVAHV INYEMPSSID TYTHRIGRTG RAGKKGLATS FLTLENTDIF FDLKQMLIQS
701: NSPVPPELAR HEASKFKPGS VPDRPPRRND TVYATH

Best Arabidopsis Sequence Match ( AT2G33730.1 )
(BLAST)

001: MKRTINEVVG STSVNTLDSS IAKKPVFLTK KQREELALKR RQDQISEQRV RREQLGRPEP ETEDVSNGDT NRDKDRDRDR DRDRERDRDR ERDRGRDRDR
101: DRDRDRDRDR ERERDRERDR RERDREPDRR NREKEREEEV KAREKARVEK LVEREKEKEL DAIKEQYLGG KKPKKRVIRP SEKFRFSFDW ENTEDTSRDM
201: NVLYQNPHEA QLLFGRGFRA GMDRREQKKQ AAKHEKEMRD EIRKKDGIVE KPEEAAAQRV REEAADTYDS FDMRVDRHWS DKRLEEMTER DWRIFREDFN
301: ISYKGSRIPR PMRSWEESKL TSELLKAVER AGYKKPSPIQ MAAIPLGLQQ RDVIGIAETG SGKTAAFVLP MLAYISRLPP MSEENETEGP YAVVMAPTRE
401: LAQQIEEETV KFAHYLGFRV TSIVGGQSIE EQGLKITQGC EIVIATPGRL IDCLERRYAV LNQCNYVVLD EADRMIDMGF EPQVAGVLDA MPSSNLKPEN
501: EEEELDEKKI YRTTYMFSAT MPPGVERLAR KYLRNPVVVT IGTAGKTTDL ISQHVIMMKE SEKFFRLQKL LDELGEKTAI VFVNTKKNCD SIAKNLDKAG
601: YRVTTLHGGK SQEQREISLE GFRAKRYNVL VATDVVGRGI DIPDVAHVIN YDMPKHIEMY THRIGRTGRA GKSGVATSFL TLHDTEVFYD LKQMLVQSNS
701: AVPPELARHE ASRFKPGTVP DRPPRHSDTV YIN

Arabidopsis Description

RH21DEAD-box ATP-dependent RNA helicase 21 [Source:UniProtKB/Swiss-Prot;Acc:P93008]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.