Factsheet for Os06t0602400-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus

Predictor Summary:

nucleus 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus
PProwler:	mitochondrion
YLoc:	cytosol

nucleus: 18203134
plasma membrane: 27800704

msms PMID: 18203134 doi

G Li, BR Nallamilli, F Tan, Z Peng

Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU76674	Sorghum	cytosol	81.2	69.31
Zm00001d036897_P001	Maize	extracellular	79.34	62.54
HORVU7Hr1G084210.1	Barley	cytosol	76.03	60.33
TraesCS7A01G374000.1	Wheat	nucleus	77.69	53.18
Os11t0599500-00	Rice	nucleus, plasma membrane	60.54	47.03
Os07t0202100-01	Rice	nucleus	61.16	46.4
Os03t0805200-01	Rice	plastid	60.54	46.0
VIT_11s0016g05090.t01	Wine grape	cytosol	57.64	45.51
KRH20283	Soybean	plastid	53.72	44.37
KRH03709	Soybean	plastid	54.96	43.61
GSMUA_Achr5P06030_001	Banana	nucleus	55.17	37.13
Os01t0197200-01	Rice	plasma membrane	36.16	35.43
Os02t0150100-02	Rice	cytosol	32.02	33.7
Os07t0301200-01	Rice	cytosol	33.06	31.25
Os01t0911100-01	Rice	nucleus, plastid	27.07	27.46
Os01t0172200-01	Rice	cytosol	38.84	24.77
Os06t0697200-00	Rice	cytosol	31.41	24.56
Os02t0150000-00	Rice	mitochondrion	8.26	23.12
Os01t0549400-01	Rice	nucleus	37.81	23.11
Os03t0708600-02	Rice	nucleus	33.26	21.88
Os03t0308500-01	Rice	mitochondrion	34.5	21.69
Os08t0154225-00	Rice	cytosol	23.14	18.82
Os08t0159900-01	Rice	extracellular, nucleus	33.88	15.63
Os08t0154200-01	Rice	cytosol, nucleus	2.27	5.14
Os01t0911000-01	Rice	nucleus	0.21	0.3

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A0P0WYT0	ProteinID:BAS98500.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
EnsemblPlantsGene:Os06g0602400	EnsemblPlants:Os06t0602400-01	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039
PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR24031	PANTHER:PTHR24031:SF363	InterPro:RNA-helicase_DEAD-box_CS	SMART:SM00487
SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0000E12897	SEG:seg	:	:

Description

RNA helicase 52ASimilar to DEAD-box protein 3, X-chromosomal (DEAD-box RNA helicase DEAD3) (mDEAD3) (Embryonic RNA helicase) (D1PAS1 related sequence 2). (Os06t0602400-01)

Coordinates

chr6:+:23806008..23811036

Molecular Weight (calculated)

51437.0 Da

IEP (calculated)

9.847

GRAVY (calculated)

-0.380

Length

484 amino acids

Sequence
(BLAST)

001: LAGRDLMACA QTGSGKTAAF CLPVVSGLVA AGGSGIGHRE RSSFNRAAAK PRALVLAPTR ELAAQINEEA KKFSFQTGLR VVVAYGGTPM YNQLRDLERG
101: ADILVATPGR LVDMVERSKV SLEAIKYLVM DEADRMLDMG FEPQIRKIVE RMNMPRKSVR QTMLFSATFP PEIQRLASDF LSNYIFITVG RVGSSTDLIM
201: QKVELLSDGE KRGYLLDLLQ RQSVGVANSK LQQPLTLVFV ETKREADSLR YWLYSKGFPA TAIHGDRTQQ ERESALRSFK TGLTPIMVAT DVASRGLDVP
301: NVAHVINYDL PKSIEDYVHR IGRTGRAGKA GSATAFFTES DHSLAKGLLE LMTEAKQDVP DWLVQYAERP YYGGSSYGGR NRRSGGGGNR FAGRDFRQGS
401: GGGYSGGGGG GGYSGGGGGG GYSGGGGGYS GGGRGGGYSR GGRGGYSGGG GGGGGDPYRA SAPPPRYYPS YPMGTADINA SGWD

Best Arabidopsis Sequence Match ( AT3G58510.2 )
(BLAST)

001: MSASWADVAD SEKAVSQSKP PYVPPHLRNR PSEPVAAPLP QNDHAGYGGQ PAGSRWAPPS SGGGGASGGG YRNDGGRTGY GYGAGGGGGG GGGWNNRSGG
101: WDRREREVNP FGDDAELEPV FTEQENTGIN FDAYEDIPVE TSGGDVPPPV NTFADIDLGD ALNLNIRRCK YVRPTPVQRH AIPILLAERD LMACAQTGSG
201: KTAAFCFPII SGIMKDQHVE RPRGSRAVYP FAVILSPTRE LACQIHDEAK KFSYQTGVKV VVAYGGTPIH QQLRELERGC DILVATPGRL NDLLERARVS
301: MQMIRFLALD EADRMLDMGF EPQIRKIVEQ MDMPPRGVRQ TMLFSATFPS QIQRLAADFM SNYIFLAVGR VGSSTDLITQ RVEFVQESDK RSHLMDLLHA
401: QRETQDKQSL TLVFVETKRG ADTLENWLCM NEFPATSIHG DRTQQEREVA LRSFKTGRTP ILVATDVAAR GLDIPHVAHV VNFDLPNDID DYVHRIGRTG
501: RAGKSGIATA FFNENNAQLA RSLAELMQEA NQEVPEWLTR YASRASFGGG KKRSGGRFGG RDFRREGSYS RGGGGGGGGG GSDYYGGGGY GGGGYGGAPS
601: GGYGAGVTSA WD

Arabidopsis Description

RH11DEAD-box ATP-dependent RNA helicase 11 [Source:UniProtKB/Swiss-Prot;Acc:Q8LA13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.