Factsheet for Os02t0150100-02

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	cytosol
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G048040.1	Barley	plastid	91.74	73.78
CDY39973	Canola	cytosol	80.22	71.24
CDX87315	Canola	cytosol	80.22	71.24
CDY61276	Canola	cytosol	80.22	71.1
CDY38671	Canola	cytosol	80.22	71.1
TraesCS3B01G141300.1	Wheat	cytosol	94.57	70.85
EER92293	Sorghum	cytosol	94.78	70.55
Zm00001d047502_P001	Maize	extracellular	94.35	70.23
AT4G33370.1	Thale cress	cytosol	81.52	69.19
KRH68534	Soybean	cytosol	88.04	68.99
TraesCS5B01G152200.1	Wheat	cytosol	91.3	68.97
TraesCS5D01G159000.1	Wheat	cytosol	90.87	68.75
KRG94409	Soybean	cytosol	87.83	68.71
HORVU3Hr1G022710.1	Barley	mitochondrion	94.78	68.34
CDX67949	Canola	cytosol	80.43	68.01
VIT_09s0002g08120.t01	Wine grape	cytosol	86.74	67.97
TraesCS5A01G153700.1	Wheat	cytosol	85.65	67.58
PGSC0003DMT400036663	Potato	cytosol	86.3	67.4
GSMUA_Achr1P13820_001	Banana	mitochondrion	79.35	67.34
PGSC0003DMT400073340	Potato	cytosol	85.87	67.06
Solyc03g117440.2.1	Tomato	cytosol, nucleus	86.74	67.06
Solyc06g068280.2.1	Tomato	extracellular, nucleus	86.3	66.72
TraesCS3A01G122100.1	Wheat	mitochondrion, plastid	94.78	66.26
AT5G51280.1	Thale cress	cytosol	84.13	65.48
Bra018133.1-P	Field mustard	cytosol	83.7	65.48
GSMUA_Achr2P09160_001	Banana	cytosol	77.83	65.45
Bra008471.1-P	Field mustard	cytosol	80.0	65.36
Bra035177.1-P	Field mustard	cytosol	82.61	64.63
Os06t0697200-00	Rice	cytosol	84.57	62.84
Bra003568.1-P	Field mustard	cytosol	80.43	62.61
CDX79384	Canola	cytosol	42.39	50.0
Os01t0197200-01	Rice	plasma membrane	36.52	34.01
Os06t0602400-01	Rice	nucleus, plasma membrane	33.7	32.02
Os07t0301200-01	Rice	cytosol	33.04	29.69
Os01t0911100-01	Rice	nucleus, plastid	27.61	26.62
Os11t0599500-00	Rice	nucleus, plasma membrane	35.43	26.16
Os03t0805200-01	Rice	plastid	36.09	26.06
Os07t0202100-01	Rice	nucleus	35.87	25.86
Os03t0308500-01	Rice	mitochondrion	39.57	23.64
Os03t0708600-02	Rice	nucleus	34.78	21.74
Os08t0154225-00	Rice	cytosol	27.17	21.01
Os01t0549400-01	Rice	nucleus	35.22	20.45
Os02t0150000-00	Rice	mitochondrion	7.61	20.23
Os01t0172200-01	Rice	cytosol	32.83	19.89
Os08t0159900-01	Rice	extracellular, nucleus	36.96	16.21
Os08t0154200-01	Rice	cytosol, nucleus	1.52	3.27
Os01t0911000-01	Rice	nucleus	0.22	0.3

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A0P0VEV8	ProteinID:BAS76998.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	GO:GO:0046872	GO:GO:0071013
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR001878	InterPro:IPR014001	InterPro:IPR014014
EnsemblPlantsGene:Os02g0150100	EnsemblPlants:Os02t0150100-02	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS50158
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF542	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00343	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	SUPFAM:SSF57756	UniParc:UPI0000DF0558
InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:	:	:

Description

RNA helicase 35ASimilar to ATP-dependent RNA helicase DDX41. (Os02t0150100-01);Similar to DEAD-box protein abstrakt. (Os02t0150100-02)

Coordinates

chr2:-:2766489..2769409

Molecular Weight (calculated)

51238.6 Da

IEP (calculated)

6.206

GRAVY (calculated)

-0.166

Length

460 amino acids

Sequence
(BLAST)

001: WHILVDGDDV PPPARDFRDL RLPEPMLRKL REKGIVQPTP IQVQGLPVVL SGRDMIGIAF TGSGKTLVFV LPLIMVALQE EMMMPIVPGE GPFGMIICPS
101: RELAKQTYDV IEQFLVPLKE AGYPEIRPLL CIGGVDMRAQ LDVVKKGVHI VVATPGRLKD LLAKKKMNLD NCRYLTLDEA DRLVDLGFED DIREVFDHFK
201: AQRQTLLFSA TMPKKIQNFA KSALVKPVIV NVGRAGAANL DVIQEVEYVK EDARIIYLLE CLQKTPPPVL VFCENKADVD YIHEYLLLKG VEAVAIHGGK
301: DQEERENAIE FFKNGKKDVL VATDVASKGL DFPDIQHVIN YDMPAEIENY VHRIGRTGRC GKTGIATTFI NKNQTETTLL DLKHLLKEAK QRIPPVLAEL
401: NDPLEDEETM AKESGVKGCA YCGGLGHRVT DCPKLEHQKS MAIAGSRRDY YGGGGYRGEI

Best Arabidopsis Sequence Match ( AT5G51280.1 )
(BLAST)

001: MESIMEEADS YIEYVSVAER RAIAAQKILQ RKGKASELEE EADKEKLAEA KPSLLVQATQ LKRDVPEVSA TEQIILQEKE MMEHLSDKKT LMSVRELAKG
101: ITYTEPLLTG WKPPLHIRKM SSKQRDLIRK QWHIIVNGDD IPPPIKNFKD MKFPRPVLDT LKEKGIVQPT PIQVQGLPVI LAGRDMIGIA FTGSGKTLVF
201: VLPMIMIALQ EEMMMPIAAG EGPIGLIVCP SRELARQTYE VVEQFVAPLV EAGYPPLRSL LCIGGIDMRS QLEVVKRGVH IVVATPGRLK DMLAKKKMSL
301: DACRYLTLDE ADRLVDLGFE DDIREVFDHF KSQRQTLLFS ATMPTKIQIF ARSALVKPVT VNVGRAGAAN LDVIQEVEYV KQEAKIVYLL ECLQKTSPPV
401: LIFCENKADV DDIHEYLLLK GVEAVAIHGG KDQEDREYAI SSFKAGKKDV LVATDVASKG LDFPDIQHVI NYDMPAEIEN YVHRIGRTGR CGKTGIATTF
501: INKNQSETTL LDLKHLLQEA KQRIPPVLAE LNDPMEEAET IANASGVKGC AYCGGLGHRI RDCPKLEHQK SVAISNSRKD YFGSGGYRGE I

Arabidopsis Description

RH35DEAD-box ATP-dependent RNA helicase 35 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.