Factsheet for Solyc06g068280.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400073340	Potato	cytosol	97.82	98.81
Solyc03g117440.2.1	Tomato	cytosol, nucleus	91.43	91.43
KRH68534	Soybean	cytosol	87.73	88.93
VIT_09s0002g08120.t01	Wine grape	cytosol	87.56	88.76
KRG94409	Soybean	cytosol	87.56	88.61
CDY38671	Canola	cytosol	75.8	86.9
CDY61276	Canola	cytosol	75.8	86.9
CDY39973	Canola	cytosol	75.63	86.87
CDX87315	Canola	cytosol	75.29	86.49
Os02t0150100-02	Rice	cytosol	66.72	86.3
Bra008471.1-P	Field mustard	cytosol	79.66	84.19
AT5G51280.1	Thale cress	cytosol	83.53	84.09
Bra018133.1-P	Field mustard	cytosol	83.03	84.01
Bra035177.1-P	Field mustard	cytosol	82.18	83.16
GSMUA_Achr2P09160_001	Banana	cytosol	75.63	82.27
CDX67949	Canola	cytosol	74.96	81.99
AT4G33370.1	Thale cress	cytosol	72.61	79.7
Bra003568.1-P	Field mustard	cytosol	78.99	79.53
TraesCS3B01G141300.1	Wheat	cytosol	76.81	74.43
HORVU5Hr1G048040.1	Barley	plastid	71.26	74.13
Zm00001d047502_P001	Maize	extracellular	76.81	73.95
EER92293	Sorghum	cytosol	76.64	73.79
CDX79384	Canola	cytosol	47.4	72.31
TraesCS5D01G159000.1	Wheat	cytosol	73.78	72.2
TraesCS5B01G152200.1	Wheat	cytosol	73.45	71.76
TraesCS5A01G153700.1	Wheat	cytosol	69.92	71.36
Os06t0697200-00	Rice	cytosol	74.12	71.24
HORVU3Hr1G022710.1	Barley	mitochondrion	76.13	71.0
GSMUA_Achr1P13820_001	Banana	mitochondrion	63.7	69.93
TraesCS3A01G122100.1	Wheat	mitochondrion, plastid	76.64	69.3
Solyc12g044860.1.1	Tomato	nucleus	28.24	35.07
Solyc09g015930.2.1	Tomato	plastid	28.74	30.65
Solyc01g005960.2.1	Tomato	plastid	29.58	29.14
Solyc03g052980.2.1	Tomato	nucleus	29.58	28.76
Solyc08g076200.2.1	Tomato	nucleus	26.72	28.75
Solyc12g035130.1.1	Tomato	nucleus	27.23	26.47
Solyc03g112350.2.1	Tomato	nucleus	28.74	26.27
Solyc01g079330.2.1	Tomato	nucleus	34.12	26.23
Solyc02g068190.1.1	Tomato	cytosol, nucleus	28.74	25.83
Solyc02g086660.2.1	Tomato	nucleus	28.24	23.8
Solyc02g081290.2.1	Tomato	nucleus	26.05	23.74
Solyc12g098700.1.1	Tomato	nucleus	33.61	17.44
Solyc01g057760.2.1	Tomato	nucleus	27.73	13.51

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787
GO:GO:0071013	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR001878	InterPro:IPR014001
InterPro:IPR014014	UniProt:K4C803	InterPro:P-loop_NTPase	PFAM:PF00098	PFAM:PF00270	PFAM:PF00271
PFscan:PS50158	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF542
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00343	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	SUPFAM:SSF57756
EnsemblPlantsGene:Solyc06g068280.2	EnsemblPlants:Solyc06g068280.2.1	UniParc:UPI0002766392	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg

Description

No Description!

Coordinates

chr6:-:42308721..42312394

Molecular Weight (calculated)

66833.3 Da

IEP (calculated)

6.462

GRAVY (calculated)

-0.290

Length

595 amino acids

Sequence
(BLAST)

001: MADHLNMEIE EEDDYVEYVP VAKRRAIEAQ KILQRKGKSE AFEEEEEKIK LVEAKPSLLV KASQLKKEQP EISHAEQVFQ QEKEMIEHLS DKKTLMSVRE
101: LAKGITYTEP LRTGWKPPLA IRRNSKKACD AIRKQWHIIV EGDDVTPPIK NFKDMRFPEP ILKKLRAKGI IQPTPIQVQG LPVILSGRDM IGIAFTGSGK
201: TLVFVLPLIM VALQEEIMLP IAPGEGPFGL IICPSRELAR QTYEVIEQFI EPLMESGYPE LRPLLCIGGV DMKSQVDVVK RGVHIVVATP GRLKDLLAKK
301: KMNLDNCRYL TLDEADRLVD LGFEDDIREV FDHFKAQRQT LLFSATMPTK IQNFARNALV KPVIVNVGRA GAANLDVIQE VEYVKQEAKI VYLLECLQKT
401: PPPVLVFCEN KADVDDIHEY LLLKGVEAVA VHGGKDQEER EYAIAAFKAC KKDVLVATDV ASKGLDFPDI QHVINYDMPA EIENYVHRIG RTGRCGKTGI
501: ATTFINKNQS ETTLLDLKHL LQEAKQRIPP VLAELNDPMD DVDAITDASG VKGCAYCGGL GHRIRDCPKL DHQRSQQIAN SRRDYFGSGG YRGEI

Best Arabidopsis Sequence Match ( AT5G51280.1 )
(BLAST)

001: MESIMEEADS YIEYVSVAER RAIAAQKILQ RKGKASELEE EADKEKLAEA KPSLLVQATQ LKRDVPEVSA TEQIILQEKE MMEHLSDKKT LMSVRELAKG
101: ITYTEPLLTG WKPPLHIRKM SSKQRDLIRK QWHIIVNGDD IPPPIKNFKD MKFPRPVLDT LKEKGIVQPT PIQVQGLPVI LAGRDMIGIA FTGSGKTLVF
201: VLPMIMIALQ EEMMMPIAAG EGPIGLIVCP SRELARQTYE VVEQFVAPLV EAGYPPLRSL LCIGGIDMRS QLEVVKRGVH IVVATPGRLK DMLAKKKMSL
301: DACRYLTLDE ADRLVDLGFE DDIREVFDHF KSQRQTLLFS ATMPTKIQIF ARSALVKPVT VNVGRAGAAN LDVIQEVEYV KQEAKIVYLL ECLQKTSPPV
401: LIFCENKADV DDIHEYLLLK GVEAVAIHGG KDQEDREYAI SSFKAGKKDV LVATDVASKG LDFPDIQHVI NYDMPAEIEN YVHRIGRTGR CGKTGIATTF
501: INKNQSETTL LDLKHLLQEA KQRIPPVLAE LNDPMEEAET IANASGVKGC AYCGGLGHRI RDCPKLEHQK SVAISNSRKD YFGSGGYRGE I

Arabidopsis Description

RH35DEAD-box ATP-dependent RNA helicase 35 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.