CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
nucleus 2
mitochondrion 1
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047502_P001	Maize	extracellular	97.09	97.09
Os02t0150100-02	Rice	cytosol	70.55	94.78
TraesCS3B01G141300.1	Wheat	cytosol	85.11	85.67
HORVU3Hr1G022710.1	Barley	mitochondrion	85.44	82.76
HORVU5Hr1G048040.1	Barley	plastid	75.73	81.82
TraesCS5B01G152200.1	Wheat	cytosol	80.1	81.28
TraesCS5D01G159000.1	Wheat	cytosol	79.61	80.92
TraesCS5A01G153700.1	Wheat	cytosol	76.05	80.62
KRH68534	Soybean	cytosol	76.54	80.58
TraesCS3A01G122100.1	Wheat	mitochondrion, plastid	85.6	80.4
KRG94409	Soybean	cytosol	76.38	80.27
VIT_09s0002g08120.t01	Wine grape	cytosol	75.08	79.05
CDY39973	Canola	cytosol	66.18	78.96
CDY61276	Canola	cytosol	66.18	78.81
CDY38671	Canola	cytosol	66.02	78.61
CDX87315	Canola	cytosol	65.86	78.57
PGSC0003DMT400036663	Potato	cytosol	74.27	77.93
GSMUA_Achr2P09160_001	Banana	cytosol	68.61	77.51
PGSC0003DMT400073340	Potato	cytosol	73.79	77.42
Solyc03g117440.2.1	Tomato	cytosol, nucleus	74.43	77.31
Solyc06g068280.2.1	Tomato	extracellular, nucleus	73.79	76.64
Bra018133.1-P	Field mustard	cytosol	72.49	76.19
AT5G51280.1	Thale cress	cytosol	72.82	76.14
Bra008471.1-P	Field mustard	cytosol	69.26	76.02
CDX67949	Canola	cytosol	66.18	75.18
Bra035177.1-P	Field mustard	cytosol	71.52	75.17
AT4G33370.1	Thale cress	cytosol	65.53	74.72
Bra003568.1-P	Field mustard	cytosol	70.06	73.27
GSMUA_Achr1P13820_001	Banana	mitochondrion	60.03	68.45
CDX79384	Canola	cytosol	40.94	64.87
KXG31614	Sorghum	cytosol	28.32	35.57
OQU76674	Sorghum	cytosol	27.83	30.34
EER96257	Sorghum	cytosol	25.08	30.27
EES04084	Sorghum	cytosol	27.51	29.41
KXG37329	Sorghum	cytosol, plastid	28.16	27.4
KXG28851	Sorghum	cytosol, plastid	27.35	27.04
KXG34634	Sorghum	plastid	28.16	26.93
EER94974	Sorghum	cytosol, mitochondrion, nucleus, plastid	31.72	25.59
OQU83862	Sorghum	nucleus	26.38	25.39
OQU86230	Sorghum	cytosol	26.86	23.22
KXG37746	Sorghum	nucleus	27.67	21.16
KXG32714	Sorghum	nucleus	26.7	20.86
OQU79814	Sorghum	nucleus	30.74	19.25
EES14596	Sorghum	nucleus	31.39	18.27
OQU84042	Sorghum	cytosol	28.96	12.9

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:8082312	UniProt:C5X0P4	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom
EnsemblPlants:EER92293	ProteinID:EER92293	ProteinID:EER92293.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004004	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	GO:GO:0071013
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR001878	InterPro:IPR014001	InterPro:IPR014014
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS50158	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF542	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00343	SMART:SM00487
SMART:SM00490	EnsemblPlantsGene:SORBI_3001G376800	SUPFAM:SSF52540	SUPFAM:SSF57756	unigene:Sbi.10256	UniParc:UPI0001A82270
RefSeq:XP_002465295.1	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:+:66527677..66530997

Molecular Weight (calculated)

68397.1 Da

IEP (calculated)

7.251

GRAVY (calculated)

-0.261

Length

618 amino acids

Sequence
(BLAST)

001: MAATAASSAA ADAASNSDEE ANYEEYIPVA KRRAMEAERL RQLRLNKSAP TSAASTLPLP PPPPLLPAQA SVPDAAAKPS LLVKATQLKR AAPEVTATEQ
101: RIQQEKEVIE NLSDNKSLRS VREIAKGIIY TDSIQTGWKP PLRLRRMPLA KANELRRKWH IIVDGDDVPP PARDFRDLRL PEPMLRKLRE RGIVQPTPIQ
201: VQGLPVVLSG RDMIGIAFTG SGKTLVFVLP LIMVAVQEEI LMPIVPGEGP FGMIICPSRE LAKQTYDVIE QFLIPLKEAG YPEIRPLLCI GGVDMRTQLD
301: VLKKGVHIVV ATPGRLKDLL AKKKMNLDNC RYLTLDEADR LVDLGFEDDI KEVFDHFKDQ RQTLLFSATM PQKIQNFAKN ALVKPVTVNV GRAGAANLDV
401: IQEVEYVKED ARIIYLLECL QKTPPPVLIF CENKADVDYI HEYLLLKGVE AVAIHGGKDQ EERQNAIDSF KTGRKDVLVA TDVASKGLDF PDIQHVINYD
501: MPAEIENYVH RIGRTGRCGK TGIATTFINK NQTETTLLDL KHLLKEAKQR IPPVLAELND PLEDEEIIAK ESGVKGCAYC GGLGHRVSDC PKLEHQKSMA
601: IAGSRKDYFG GGGYRGEI

Best Arabidopsis Sequence Match ( AT5G51280.1 )
(BLAST)

001: MESIMEEADS YIEYVSVAER RAIAAQKILQ RKGKASELEE EADKEKLAEA KPSLLVQATQ LKRDVPEVSA TEQIILQEKE MMEHLSDKKT LMSVRELAKG
101: ITYTEPLLTG WKPPLHIRKM SSKQRDLIRK QWHIIVNGDD IPPPIKNFKD MKFPRPVLDT LKEKGIVQPT PIQVQGLPVI LAGRDMIGIA FTGSGKTLVF
201: VLPMIMIALQ EEMMMPIAAG EGPIGLIVCP SRELARQTYE VVEQFVAPLV EAGYPPLRSL LCIGGIDMRS QLEVVKRGVH IVVATPGRLK DMLAKKKMSL
301: DACRYLTLDE ADRLVDLGFE DDIREVFDHF KSQRQTLLFS ATMPTKIQIF ARSALVKPVT VNVGRAGAAN LDVIQEVEYV KQEAKIVYLL ECLQKTSPPV
401: LIFCENKADV DDIHEYLLLK GVEAVAIHGG KDQEDREYAI SSFKAGKKDV LVATDVASKG LDFPDIQHVI NYDMPAEIEN YVHRIGRTGR CGKTGIATTF
501: INKNQSETTL LDLKHLLQEA KQRIPPVLAE LNDPMEEAET IANASGVKGC AYCGGLGHRI RDCPKLEHQK SVAISNSRKD YFGSGGYRGE I

Arabidopsis Description

RH35DEAD-box ATP-dependent RNA helicase 35 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.