CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d019449_P004	Maize	nucleus	95.51	96.26
Os07t0301200-01	Rice	cytosol	84.38	84.38
HORVU5Hr1G037290.3	Barley	nucleus	82.81	80.0
TraesCS5D01G125100.1	Wheat	nucleus	83.01	79.59
TraesCS5B01G120500.1	Wheat	nucleus	82.23	79.28
TraesCS5A01G114400.1	Wheat	nucleus	82.81	79.25
GSMUA_Achr11P...	Banana	nucleus	75.78	67.24
KRH39630	Soybean	nucleus	69.34	66.11
KRH74291	Soybean	nucleus	69.14	65.92
CDY65864	Canola	nucleus	68.75	65.92
CDY66221	Canola	nucleus	68.16	65.11
AT1G31970.1	Thale cress	cytosol	67.97	64.8
Bra023227.1-P	Field mustard	nucleus	68.55	64.64
CDY41747	Canola	nucleus	67.38	63.89
Bra035518.1-P	Field mustard	nucleus	66.21	63.25
Solyc08g076200.2.1	Tomato	nucleus	67.97	62.93
PGSC0003DMT400024026	Potato	nucleus	68.36	62.84
VIT_02s0109g00380.t01	Wine grape	cytosol	71.29	58.12
CDX84112	Canola	nucleus	29.69	50.67
KXG31614	Sorghum	cytosol	38.09	39.63
EES04084	Sorghum	cytosol	38.67	34.26
OQU76674	Sorghum	cytosol	34.38	31.04
KXG28851	Sorghum	cytosol, plastid	33.4	27.36
KXG37329	Sorghum	cytosol, plastid	33.2	26.77
KXG34634	Sorghum	plastid	32.62	25.85
EER92293	Sorghum	cytosol	30.27	25.08
OQU83862	Sorghum	nucleus	30.27	24.14
OQU86230	Sorghum	cytosol	33.59	24.06
KXG32714	Sorghum	nucleus	35.16	22.76
EER94974	Sorghum	cytosol, mitochondrion, nucleus, plastid	33.01	22.06
KXG37746	Sorghum	nucleus	33.4	21.16
OQU79814	Sorghum	nucleus	33.98	17.63
EES14596	Sorghum	nucleus	34.77	16.76
OQU84042	Sorghum	cytosol	36.72	13.54

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:8057317	UniProt:C5X497	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom
EnsemblPlants:EER96257	ProteinID:EER96257	ProteinID:EER96257.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0005829
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF215	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
EnsemblPlantsGene:SORBI_3002G112100	SUPFAM:SSF52540	UniParc:UPI0001A83497	RefSeq:XP_002459736.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr2:+:13665044..13679600

Molecular Weight (calculated)

55464.0 Da

IEP (calculated)

9.478

GRAVY (calculated)

-0.266

Length

512 amino acids

Sequence
(BLAST)

001: MGRNLDAEQA EAPRSSKKEK KSKKDKKRKL AAEAEEAAAA AVTATEETVK SIKKKKLVEN GAGAGGGGEA ENGAEKTVAV TGKGSEDPKY APLRSFSAAE
101: LPSQVLDCCS AFARPSPIQA HAWPFLLDGR DFIGIAATGS GKTIAFGVPA LMHIRKKVGG KAVKKAVPRC LVLSPTRELA QQIADVLSEA GAPCGIKSVC
201: LYGGTKKEPQ ISALKSGVDI VIGTPGRMKD LIEMGVCRLN EVSFVVLDEA DRMLDMGFEP EVRAILSQTS SVRQMVMFSA TWPLAVHKLA QEFMDPNPIK
301: VVIGSEDLAA NHDVMQIVEV LDDRTRDSRL LALLDKYHQA QSNRVLVFVL YKKEAARVET MLQRRGWKAV SVHGDKAQHD RTKALSLFKE GKCPLMIATD
401: VASRGLDIPD VEVVINYSYP LTTEDYVHRI GRTGRAGKKG VAHTFFTQAN KALAGELVNV LREADQVVPP ALMKFGTHVK KKESKLYGSH FKEITADAPK
501: STKITFGDSD ED

Best Arabidopsis Sequence Match ( AT1G31970.1 )
(BLAST)

001: MAGQKQELPV SGEPLAVESP MTNKKKKKSK KNKHTEENHE VEEVPQEVTN GVEEELSNKE KKKKRKREEK ESEKNKKKDV PEKKLEAEDL GEGESEQQKV
101: VVTGKGVEEA KYAALKTFAE SNLPENVLDC CKTFEKPSPI QSHTWPFLLD GRDLIGIAKT GSGKTLAFGI PAIMHVLKKN KKIGGGSKKV NPTCLVLSPT
201: RELAVQISDV LREAGEPCGL KSICVYGGSS KGPQISAIRS GVDIVIGTPG RLRDLIESNV LRLSDVSFVV LDEADRMLDM GFEEPVRFIL SNTNKVRQMV
301: MFSATWPLDV HKLAQEFMDP NPIKVIIGSV DLAANHDVMQ IIEVLDERAR DQRLIALLEK YHKSQKNRVL VFALYKVEAE RLERFLQQRG WKAVSIHGNK
401: AQSERTRSLS LFKEGSCPLL VATDVAARGL DIPDVEVVIN YTFPLTTEDY VHRIGRTGRA GKKGVAHTFF TPLNKGLAGE LVNVLREAGQ VVPADLLKFG
501: THVKKKESKL YGAHFKEIAA DAPKATKITF DNSDDED

Arabidopsis Description

RH5STRS1 [Source:UniProtKB/TrEMBL;Acc:A0A178W5E1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.