Factsheet for HORVU5Hr1G037290.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G125100.1	Wheat	nucleus	97.17	96.44
TraesCS5B01G120500.1	Wheat	nucleus	96.04	95.86
TraesCS5A01G114400.1	Wheat	nucleus	96.23	95.33
Os07t0301200-01	Rice	cytosol	80.19	83.01
EER96257	Sorghum	cytosol	80.0	82.81
Zm00001d019449_P004	Maize	nucleus	79.25	82.68
KRH74291	Soybean	nucleus	67.55	66.67
KRH39630	Soybean	nucleus	67.36	66.48
GSMUA_Achr11P...	Banana	nucleus	71.89	66.03
CDY65864	Canola	nucleus	65.85	65.36
AT1G31970.1	Thale cress	cytosol	65.28	64.43
CDY66221	Canola	nucleus	65.09	64.37
Bra023227.1-P	Field mustard	nucleus	65.66	64.09
CDY41747	Canola	nucleus	64.34	63.15
Solyc08g076200.2.1	Tomato	nucleus	65.28	62.57
Bra035518.1-P	Field mustard	nucleus	63.21	62.5
PGSC0003DMT400024026	Potato	nucleus	65.47	62.3
VIT_02s0109g00380.t01	Wine grape	cytosol	67.92	57.32
CDX84112	Canola	nucleus	27.92	49.33
HORVU1Hr1G083090.1	Barley	cytosol	17.55	37.05
HORVU3Hr1G092600.1	Barley	cytosol	39.25	36.24
HORVU3Hr1G092610.1	Barley	cytosol	39.25	36.24
HORVU3Hr1G018850.7	Barley	cytosol	36.79	35.65
HORVU3Hr1G031710.1	Barley	mitochondrion	17.55	35.63
HORVU7Hr1G084210.1	Barley	cytosol	33.21	28.85
HORVU4Hr1G031280.1	Barley	cytosol, plastid	31.13	27.45
HORVU5Hr1G048040.1	Barley	plastid	28.68	26.57
HORVU1Hr1G091050.3	Barley	nucleus	29.43	26.09
HORVU5Hr1G109340.2	Barley	plastid	32.08	25.68
HORVU3Hr1G024610.13	Barley	cytosol, plastid	33.58	25.18
HORVU3Hr1G022710.1	Barley	mitochondrion	29.62	24.61
HORVU6Hr1G080730.2	Barley	cytosol	13.96	22.63
HORVU5Hr1G044620.1	Barley	cytosol, mitochondrion	15.85	22.11
HORVU4Hr1G053550.2	Barley	mitochondrion	32.45	21.66
HORVU4Hr1G007110.17	Barley	mitochondrion	31.13	21.43
HORVU2Hr1G025790.1	Barley	nucleus	34.34	17.86
HORVU0Hr1G020490.1	Barley	nucleus	34.34	17.07
HORVU3Hr1G018170.3	Barley	cytosol	34.91	13.39

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0016787	EnsemblPlantsGene:HORVU5Hr1G037290
EnsemblPlants:HORVU5Hr1G037290.3	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
UniProt:M0XEX8	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF215	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0002966E67	SEG:seg	:

Description

No Description!

Coordinates

chrchr5H:-:267864018..267873111

Molecular Weight (calculated)

57965.8 Da

IEP (calculated)

9.211

GRAVY (calculated)

-0.405

Length

530 amino acids

Sequence
(BLAST)

001: MDPELLSMQE ELSNDRKKDT KSKKAKKPKP AAEEAAAEED DLSNKRKKDK KSKKDKKRKL AAENEEAATE EEGKSSKKRG VTKEEPDQVG AVEKSVAVTG
101: KGFADPKYAP LKSFAAAALP TQVLDCCKGF DRPSPIQALA WPYLLDGRDF IGIAATGSGK TIAFGVPALM HVRKKLSEKG AKKGLPRCLM LAPTRELAQQ
201: IADVLTEAGA PCGINSVCLY GGTSKGPQIS SLKSGVEIVI GTPGRMKDLI EMGVCRLNEV SFVVLDEADR MLDMGFEPEV RAILSQTSSV RQMVMFSATW
301: PFAVHQLAQE FMDPNPIKVV VGSEDLAANH DVMQIVEVLD DRARDSRLVA LLDKYHRAQS NRVLVFVLYK KEAGRVEAML NKRGWKAVSV HGDKAQHDRT
401: KALSLFKEGK CPLMIATDVA SRGLDIPDVE VVINYSFPLT TEDYVHRIGR TGRAGKKGVA HTFFTQADKG LAGELVNVLR EADQVVPPAL TKFGTHVKKK
501: ESKIYGSHFK EITADAPKST KITFGDSDEE

Best Arabidopsis Sequence Match ( AT1G31970.1 )
(BLAST)

001: MAGQKQELPV SGEPLAVESP MTNKKKKKSK KNKHTEENHE VEEVPQEVTN GVEEELSNKE KKKKRKREEK ESEKNKKKDV PEKKLEAEDL GEGESEQQKV
101: VVTGKGVEEA KYAALKTFAE SNLPENVLDC CKTFEKPSPI QSHTWPFLLD GRDLIGIAKT GSGKTLAFGI PAIMHVLKKN KKIGGGSKKV NPTCLVLSPT
201: RELAVQISDV LREAGEPCGL KSICVYGGSS KGPQISAIRS GVDIVIGTPG RLRDLIESNV LRLSDVSFVV LDEADRMLDM GFEEPVRFIL SNTNKVRQMV
301: MFSATWPLDV HKLAQEFMDP NPIKVIIGSV DLAANHDVMQ IIEVLDERAR DQRLIALLEK YHKSQKNRVL VFALYKVEAE RLERFLQQRG WKAVSIHGNK
401: AQSERTRSLS LFKEGSCPLL VATDVAARGL DIPDVEVVIN YTFPLTTEDY VHRIGRTGRA GKKGVAHTFF TPLNKGLAGE LVNVLREAGQ VVPADLLKFG
501: THVKKKESKL YGAHFKEIAA DAPKATKITF DNSDDED

Arabidopsis Description

RH5STRS1 [Source:UniProtKB/TrEMBL;Acc:A0A178W5E1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.