Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY41747 | Canola | nucleus | 94.0 | 52.22 |
| CDY65864 | Canola | nucleus | 86.0 | 48.31 |
| CDY66221 | Canola | nucleus | 85.67 | 47.95 |
| AT1G31970.1 | Thale cress | cytosol | 82.0 | 45.81 |
| KRH39630 | Soybean | nucleus | 54.0 | 30.17 |
| KRH74291 | Soybean | nucleus | 53.67 | 29.98 |
| EER96257 | Sorghum | cytosol | 50.67 | 29.69 |
| Zm00001d019449_P004 | Maize | nucleus | 49.33 | 29.13 |
| Os07t0301200-01 | Rice | cytosol | 49.67 | 29.1 |
| HORVU5Hr1G037290.3 | Barley | nucleus | 49.33 | 27.92 |
| TraesCS5D01G125100.1 | Wheat | nucleus | 49.67 | 27.9 |
| TraesCS5A01G114400.1 | Wheat | nucleus | 49.67 | 27.85 |
| TraesCS5B01G120500.1 | Wheat | nucleus | 49.0 | 27.68 |
| Solyc08g076200.2.1 | Tomato | nucleus | 49.67 | 26.94 |
| PGSC0003DMT400024026 | Potato | nucleus | 50.0 | 26.93 |
| VIT_02s0109g00380.t01 | Wine grape | cytosol | 54.33 | 25.96 |
| GSMUA_Achr11P... | Banana | nucleus | 49.67 | 25.82 |
| CDY10596 | Canola | nucleus | 32.0 | 19.24 |
| CDY02459 | Canola | cytosol | 32.0 | 19.24 |
| CDY16735 | Canola | cytosol | 33.33 | 16.92 |
| CDY48128 | Canola | cytosol | 33.0 | 16.67 |
| CDX84672 | Canola | cytosol | 23.0 | 15.44 |
| CDY06034 | Canola | cytosol | 29.33 | 15.3 |
| CDX67949 | Canola | cytosol | 27.0 | 14.89 |
| CDX98301 | Canola | cytosol | 29.33 | 14.64 |
| CDX67749 | Canola | cytosol | 29.33 | 14.62 |
| CDX71948 | Canola | cytosol | 29.0 | 14.57 |
| CDY14843 | Canola | cytosol, plastid | 29.67 | 14.54 |
| CDY47978 | Canola | plastid | 20.0 | 14.35 |
| CDY49232 | Canola | cytosol | 29.33 | 14.08 |
| CDX71944 | Canola | cytosol | 29.33 | 13.88 |
| CDY38671 | Canola | cytosol | 24.0 | 13.87 |
| CDY28671 | Canola | cytosol | 30.33 | 13.73 |
| CDX87315 | Canola | cytosol | 23.67 | 13.71 |
| CDY39973 | Canola | cytosol | 23.67 | 13.71 |
| CDX91943 | Canola | cytosol | 30.33 | 13.68 |
| CDY61276 | Canola | cytosol | 23.67 | 13.68 |
| CDX91036 | Canola | cytosol | 31.0 | 13.6 |
| CDX67752 | Canola | cytosol | 28.67 | 13.59 |
| CDX98304 | Canola | cytosol, plastid | 20.67 | 13.45 |
| CDX74304 | Canola | cytosol | 30.33 | 13.23 |
| CDX83333 | Canola | nucleus | 28.0 | 13.19 |
| CDY53786 | Canola | nucleus | 25.33 | 12.88 |
| CDY72529 | Canola | cytosol | 26.0 | 12.52 |
| CDX85591 | Canola | cytosol | 31.33 | 12.5 |
| CDY37696 | Canola | nucleus | 24.0 | 12.2 |
| CDX79541 | Canola | nucleus | 24.67 | 11.76 |
| CDX95719 | Canola | cytosol | 28.0 | 11.43 |
| CDX80096 | Canola | cytosol | 27.67 | 11.4 |
| CDY37796 | Canola | cytosol | 27.67 | 11.31 |
| CDX79384 | Canola | cytosol | 14.33 | 11.03 |
| CDY00570 | Canola | nucleus | 20.33 | 10.05 |
| CDX74101 | Canola | cytosol | 27.67 | 9.47 |
| CDY08048 | Canola | nucleus | 27.67 | 9.43 |
| CDY44720 | Canola | nucleus | 26.67 | 9.26 |
| CDY41597 | Canola | nucleus | 23.67 | 9.18 |
| CDX88990 | Canola | cytosol, plastid | 15.67 | 8.42 |
| CDY31513 | Canola | nucleus | 28.0 | 7.59 |
| CDX91037 | Canola | cytosol | 4.33 | 7.43 |
| CDX91039 | Canola | cytosol | 4.33 | 7.43 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078D4T2 | EnsemblPlants:CDX84112 | ProteinID:CDX84112 | ProteinID:CDX84112.1 |
| ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0005524 | EnsemblPlantsGene:GSBRNA2T00140092001 | InterPro:Helicase_ATP-bd | InterPro:IPR014001 | InterPro:IPR014014 | InterPro:P-loop_NTPase |
| PFAM:PF00270 | ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF215 |
| InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SUPFAM:SSF52540 | UniParc:UPI0004EE63FC | SEG:seg |
Description
BnaC08g07890D
Coordinates
chrLK031835:-:1541655..1542842
Molecular Weight (calculated)
33143.1 Da
IEP (calculated)
9.654
GRAVY (calculated)
-0.607
Length
300 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGKKQELPV SDKPLAAVES PMTETIKKKK KKKKSKHSEE TQDVEVPQEV TNGEELSNKE KKKRKRDEKE MKKKEADKVP EDSGVSNGGE SEQKVVVTGK
101: DVEEAKYAAL TSFAASKLPE NVLDCCKTFQ KPSPIQSHSW PFLLDGRDLI GIAKTGSGKT LAFGIPAIMH MLKKNKNGKG TRNPTCLVLS PTRELAVQIS
201: DVLSEAGEPC GLKSICVYGG SSKRPQINAI RSGVDIVIGT PGRLRDLIDS NELRLSEVSF VVLDEADRML DMGFEEPVRF ILSKTNKGKW LRNQQLMYLV
101: DVEEAKYAAL TSFAASKLPE NVLDCCKTFQ KPSPIQSHSW PFLLDGRDLI GIAKTGSGKT LAFGIPAIMH MLKKNKNGKG TRNPTCLVLS PTRELAVQIS
201: DVLSEAGEPC GLKSICVYGG SSKRPQINAI RSGVDIVIGT PGRLRDLIDS NELRLSEVSF VVLDEADRML DMGFEEPVRF ILSKTNKGKW LRNQQLMYLV
001: MAGQKQELPV SGEPLAVESP MTNKKKKKSK KNKHTEENHE VEEVPQEVTN GVEEELSNKE KKKKRKREEK ESEKNKKKDV PEKKLEAEDL GEGESEQQKV
101: VVTGKGVEEA KYAALKTFAE SNLPENVLDC CKTFEKPSPI QSHTWPFLLD GRDLIGIAKT GSGKTLAFGI PAIMHVLKKN KKIGGGSKKV NPTCLVLSPT
201: RELAVQISDV LREAGEPCGL KSICVYGGSS KGPQISAIRS GVDIVIGTPG RLRDLIESNV LRLSDVSFVV LDEADRMLDM GFEEPVRFIL SNTNKVRQMV
301: MFSATWPLDV HKLAQEFMDP NPIKVIIGSV DLAANHDVMQ IIEVLDERAR DQRLIALLEK YHKSQKNRVL VFALYKVEAE RLERFLQQRG WKAVSIHGNK
401: AQSERTRSLS LFKEGSCPLL VATDVAARGL DIPDVEVVIN YTFPLTTEDY VHRIGRTGRA GKKGVAHTFF TPLNKGLAGE LVNVLREAGQ VVPADLLKFG
501: THVKKKESKL YGAHFKEIAA DAPKATKITF DNSDDED
101: VVTGKGVEEA KYAALKTFAE SNLPENVLDC CKTFEKPSPI QSHTWPFLLD GRDLIGIAKT GSGKTLAFGI PAIMHVLKKN KKIGGGSKKV NPTCLVLSPT
201: RELAVQISDV LREAGEPCGL KSICVYGGSS KGPQISAIRS GVDIVIGTPG RLRDLIESNV LRLSDVSFVV LDEADRMLDM GFEEPVRFIL SNTNKVRQMV
301: MFSATWPLDV HKLAQEFMDP NPIKVIIGSV DLAANHDVMQ IIEVLDERAR DQRLIALLEK YHKSQKNRVL VFALYKVEAE RLERFLQQRG WKAVSIHGNK
401: AQSERTRSLS LFKEGSCPLL VATDVAARGL DIPDVEVVIN YTFPLTTEDY VHRIGRTGRA GKKGVAHTFF TPLNKGLAGE LVNVLREAGQ VVPADLLKFG
501: THVKKKESKL YGAHFKEIAA DAPKATKITF DNSDDED
Arabidopsis Description
RH5STRS1 [Source:UniProtKB/TrEMBL;Acc:A0A178W5E1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.