Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004464.1-P | Field mustard | cytosol | 99.18 | 98.63 |
| CDY37796 | Canola | cytosol | 97.39 | 96.59 |
| CDX83333 | Canola | nucleus | 82.42 | 94.19 |
| CDX95719 | Canola | cytosol | 92.45 | 91.56 |
| AT2G47330.1 | Thale cress | cytosol | 90.38 | 86.58 |
| KRG96540 | Soybean | cytosol, mitochondrion | 78.85 | 74.74 |
| KRH68277 | Soybean | nucleus | 78.57 | 73.15 |
| PGSC0003DMT400023277 | Potato | cytosol | 75.14 | 70.67 |
| Solyc01g079330.2.1 | Tomato | nucleus | 75.0 | 70.54 |
| VIT_07s0005g01600.t01 | Wine grape | cytosol | 74.59 | 70.43 |
| GSMUA_Achr1P24870_001 | Banana | cytosol | 63.05 | 69.23 |
| Zm00001d047633_P002 | Maize | nucleus | 71.84 | 68.1 |
| EER94974 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 71.29 | 67.75 |
| TraesCS4A01G121700.1 | Wheat | mitochondrion | 71.29 | 67.67 |
| Os03t0308500-01 | Rice | mitochondrion | 71.29 | 67.4 |
| TraesCS4B01G181800.1 | Wheat | nucleus | 70.74 | 67.23 |
| GSMUA_Achr1P13000_001 | Banana | cytosol | 63.87 | 67.0 |
| Zm00001d028898_P011 | Maize | cytosol | 69.92 | 66.1 |
| TraesCS4D01G184200.1 | Wheat | mitochondrion | 71.29 | 65.78 |
| HORVU4Hr1G053550.2 | Barley | mitochondrion | 70.74 | 64.86 |
| CDY10596 | Canola | nucleus | 28.98 | 42.28 |
| CDY47978 | Canola | plastid | 24.18 | 42.11 |
| CDY02459 | Canola | cytosol | 28.71 | 41.88 |
| CDX84672 | Canola | cytosol | 23.9 | 38.93 |
| CDY16735 | Canola | cytosol | 30.36 | 37.39 |
| CDY48128 | Canola | cytosol | 30.49 | 37.37 |
| CDX98304 | Canola | cytosol, plastid | 23.35 | 36.88 |
| CDY72529 | Canola | cytosol | 31.04 | 36.28 |
| CDX87315 | Canola | cytosol | 25.41 | 35.71 |
| CDY61276 | Canola | cytosol | 25.41 | 35.65 |
| CDY39973 | Canola | cytosol | 25.14 | 35.33 |
| CDY38671 | Canola | cytosol | 25.0 | 35.07 |
| CDX67749 | Canola | cytosol | 28.98 | 35.05 |
| CDY06034 | Canola | cytosol | 27.34 | 34.61 |
| CDX98301 | Canola | cytosol | 28.3 | 34.28 |
| CDX71948 | Canola | cytosol | 27.61 | 33.67 |
| CDY14843 | Canola | cytosol, plastid | 28.3 | 33.66 |
| CDX67949 | Canola | cytosol | 25.14 | 33.64 |
| CDY41747 | Canola | nucleus | 24.59 | 33.15 |
| CDY65864 | Canola | nucleus | 23.76 | 32.4 |
| CDX71944 | Canola | cytosol | 28.16 | 32.33 |
| CDY49232 | Canola | cytosol | 27.75 | 32.32 |
| CDY66221 | Canola | nucleus | 23.76 | 32.28 |
| CDX67752 | Canola | cytosol | 27.88 | 32.07 |
| CDY37696 | Canola | nucleus | 24.86 | 30.68 |
| CDY53786 | Canola | nucleus | 24.73 | 30.51 |
| CDY44720 | Canola | nucleus | 34.62 | 29.17 |
| CDX79384 | Canola | cytosol | 15.25 | 28.46 |
| CDX91943 | Canola | cytosol | 25.27 | 27.67 |
| CDX84112 | Canola | nucleus | 11.4 | 27.67 |
| CDY28671 | Canola | cytosol | 25.0 | 27.45 |
| CDX79541 | Canola | nucleus | 23.63 | 27.34 |
| CDY41597 | Canola | nucleus | 28.98 | 27.3 |
| CDX91036 | Canola | cytosol | 25.41 | 27.05 |
| CDX74304 | Canola | cytosol | 25.41 | 26.89 |
| CDX88990 | Canola | cytosol, plastid | 20.19 | 26.34 |
| CDX85591 | Canola | cytosol | 25.69 | 24.87 |
| CDY31513 | Canola | nucleus | 35.58 | 23.42 |
| CDX74101 | Canola | cytosol | 25.96 | 21.58 |
| CDY08048 | Canola | nucleus | 25.96 | 21.48 |
| CDY00570 | Canola | nucleus | 15.25 | 18.29 |
| CDX91039 | Canola | cytosol | 1.92 | 8.0 |
| CDX91037 | Canola | cytosol | 1.92 | 8.0 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078CSG1 | EnsemblPlants:CDX80096 | ProteinID:CDX80096 | ProteinID:CDX80096.1 |
| InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005524 |
| EnsemblPlantsGene:GSBRNA2T00132995001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 |
| InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 |
| PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF531 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 |
| SMART:SM00490 | SUPFAM:SSF52540 | UniParc:UPI0004EEB12F | SEG:seg | : | : |
Description
BnaA05g00600D
Coordinates
chrLK031819:-:1871957..1874791
Molecular Weight (calculated)
79455.4 Da
IEP (calculated)
6.419
GRAVY (calculated)
-0.482
Length
728 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNRNSQRFR GGDNSEDADV DNIDFIDNEE DEEQAVHNGD EIDPLDAFME GIHQEMKSAP PPKPKAKAER YKDDDDDHVV SFLKAKKDLG LTLAADALNA
101: GYNSDEEVYA AAKAVDAGML EYDSDDNPIV VDKRKIEPIQ ALDHSSIDYE PINKDFYEEV DSISRMSEQE ALDYRHGLGI RVSGFDVPRP VKTFEDCGFS
201: SQIMSAIKKQ AYEKPTTIQC QALPVVLSGR DVIGIAKTGS GKTAAFVLPM IVHIMDQPEL RREEGPIGVI CAPTRELAHQ IYLEAKKFSK AYGLRVSAVY
301: GGMGKHEQFR ELKAGCEIVV ATPGRLIDML KMKALTMMRA SYLVLDEADR MFDLGFEPQV RSIVGQIRPD RQTLLFSATM PWKVEKLARE ILSDPIRVTV
401: GEAGMANEDI TQVVNVIPSD ADKMPWLLEK LPGMIDEGDV LVFASKKATV DEIEAQLTLN AFKVAALHGD KGQASRMETL QKFKSGVYHV LVATDVAARG
501: LDIKSLKTVV NYDTAKDMDM HVHRIGRTGR AGDKDGVAYT LVTQREARFA GELINSLVAA GQNVPPELMD LAMKDGRFKS KRDGRKGGGK KGRGRGGGGG
601: NRGVRGVDFG LGIGFNSESS GTPSQAAPSR KGVINSVRTG VMAQFKNSFV AATPSNPQSS QGGYPNKRPS LMGFVSGGTI GGDMGRTQTQ APPVAASHNA
701: SLHNSSQKTP QSSEERPRER KRRSGWDN
101: GYNSDEEVYA AAKAVDAGML EYDSDDNPIV VDKRKIEPIQ ALDHSSIDYE PINKDFYEEV DSISRMSEQE ALDYRHGLGI RVSGFDVPRP VKTFEDCGFS
201: SQIMSAIKKQ AYEKPTTIQC QALPVVLSGR DVIGIAKTGS GKTAAFVLPM IVHIMDQPEL RREEGPIGVI CAPTRELAHQ IYLEAKKFSK AYGLRVSAVY
301: GGMGKHEQFR ELKAGCEIVV ATPGRLIDML KMKALTMMRA SYLVLDEADR MFDLGFEPQV RSIVGQIRPD RQTLLFSATM PWKVEKLARE ILSDPIRVTV
401: GEAGMANEDI TQVVNVIPSD ADKMPWLLEK LPGMIDEGDV LVFASKKATV DEIEAQLTLN AFKVAALHGD KGQASRMETL QKFKSGVYHV LVATDVAARG
501: LDIKSLKTVV NYDTAKDMDM HVHRIGRTGR AGDKDGVAYT LVTQREARFA GELINSLVAA GQNVPPELMD LAMKDGRFKS KRDGRKGGGK KGRGRGGGGG
601: NRGVRGVDFG LGIGFNSESS GTPSQAAPSR KGVINSVRTG VMAQFKNSFV AATPSNPQSS QGGYPNKRPS LMGFVSGGTI GGDMGRTQTQ APPVAASHNA
701: SLHNSSQKTP QSSEERPRER KRRSGWDN
001: MSNRKFGMEG FGINRQTSYS FERSQAPQRL YVPPSSRGGD NSEDADLDNI DYMENEEAEE DIEEGGSAAA SGGEVDEIDP LDAFMEGIHQ EMKSAPPPKP
101: KEKLERYKDD DDDPVESYLK AKKDLGLTLA ADALNAGYNS DEEVYAAAKA VDAGMLDYDS DDNPIVVDKR KIEPITALDH SSIDYEPINK DFYEELESIS
201: GMTEQETTDY RQRLGIRVSG FDVHRPVKTF EDCGFSSQIM SAIKKQAYEK PTAIQCQALP IVLSGRDVIG IAKTGSGKTA AFVLPMIVHI MDQPELQRDE
301: GPIGVICAPT RELAHQIFLE AKKFSKAYGL RVSAVYGGMS KHEQFKELKA GCEIVVATPG RLIDMLKMKA LTMMRASYLV LDEADRMFDL GFEPQVRSIV
401: GQIRPDRQTL LFSATMPWKV EKLAREILSD PIRVTVGEVG MANEDITQVV NVIPSDAEKL PWLLEKLPGM IDEGDVLVFA SKKATVDEIE AQLTLNSFKV
501: AALHGDKDQA SRMETLQKFK SGVHHVLIAT DVAARGLDIK SLKTVVNYDI AKDMDMHVHR IGRTGRAGDR DGVAYTLVTQ REARFAGELV NSLVAAGQNV
601: PPELTDLAMK DGRFKSKRDG RKGGKKGRGG GGGNKGVRGV DFGLGIGFSS ESSRTPSSKA APSRSGAINS VRTGVMAQFK NSFVAATPSN PQNQAYPNKR
701: PSLMGFVSGG TIGGDMGRTQ SQAPPVAPTQ NASSHNSSQN HSQSSENRPR ERKRRSGWDN
101: KEKLERYKDD DDDPVESYLK AKKDLGLTLA ADALNAGYNS DEEVYAAAKA VDAGMLDYDS DDNPIVVDKR KIEPITALDH SSIDYEPINK DFYEELESIS
201: GMTEQETTDY RQRLGIRVSG FDVHRPVKTF EDCGFSSQIM SAIKKQAYEK PTAIQCQALP IVLSGRDVIG IAKTGSGKTA AFVLPMIVHI MDQPELQRDE
301: GPIGVICAPT RELAHQIFLE AKKFSKAYGL RVSAVYGGMS KHEQFKELKA GCEIVVATPG RLIDMLKMKA LTMMRASYLV LDEADRMFDL GFEPQVRSIV
401: GQIRPDRQTL LFSATMPWKV EKLAREILSD PIRVTVGEVG MANEDITQVV NVIPSDAEKL PWLLEKLPGM IDEGDVLVFA SKKATVDEIE AQLTLNSFKV
501: AALHGDKDQA SRMETLQKFK SGVHHVLIAT DVAARGLDIK SLKTVVNYDI AKDMDMHVHR IGRTGRAGDR DGVAYTLVTQ REARFAGELV NSLVAAGQNV
601: PPELTDLAMK DGRFKSKRDG RKGGKKGRGG GGGNKGVRGV DFGLGIGFSS ESSRTPSSKA APSRSGAINS VRTGVMAQFK NSFVAATPSN PQNQAYPNKR
701: PSLMGFVSGG TIGGDMGRTQ SQAPPVAPTQ NASSHNSSQN HSQSSENRPR ERKRRSGWDN
Arabidopsis Description
RH24DEAD-box ATP-dependent RNA helicase 24 [Source:UniProtKB/Swiss-Prot;Acc:O22907]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.