Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004464.1-P | Field mustard | cytosol | 97.68 | 97.95 |
| CDX80096 | Canola | cytosol | 96.59 | 97.39 |
| CDX83333 | Canola | nucleus | 81.88 | 94.35 |
| CDX95719 | Canola | cytosol | 91.83 | 91.7 |
| AT2G47330.1 | Thale cress | cytosol | 89.51 | 86.45 |
| KRG96540 | Soybean | cytosol, mitochondrion | 78.88 | 75.39 |
| KRH68277 | Soybean | nucleus | 78.47 | 73.66 |
| Solyc01g079330.2.1 | Tomato | nucleus | 75.07 | 71.19 |
| VIT_07s0005g01600.t01 | Wine grape | cytosol | 74.66 | 71.08 |
| PGSC0003DMT400023277 | Potato | cytosol | 74.93 | 71.06 |
| GSMUA_Achr1P24870_001 | Banana | cytosol | 62.67 | 69.38 |
| Zm00001d047633_P002 | Maize | nucleus | 70.98 | 67.84 |
| TraesCS4A01G121700.1 | Wheat | mitochondrion | 70.84 | 67.8 |
| Os03t0308500-01 | Rice | mitochondrion | 71.12 | 67.79 |
| EER94974 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 70.71 | 67.75 |
| TraesCS4B01G181800.1 | Wheat | nucleus | 70.3 | 67.36 |
| GSMUA_Achr1P13000_001 | Banana | cytosol | 63.62 | 67.29 |
| Zm00001d028898_P011 | Maize | cytosol | 69.48 | 66.23 |
| TraesCS4D01G184200.1 | Wheat | mitochondrion | 70.84 | 65.91 |
| HORVU4Hr1G053550.2 | Barley | mitochondrion | 70.3 | 64.99 |
| CDY10596 | Canola | nucleus | 28.88 | 42.48 |
| CDY47978 | Canola | plastid | 23.98 | 42.11 |
| CDY02459 | Canola | cytosol | 28.61 | 42.08 |
| CDX84672 | Canola | cytosol | 23.84 | 39.15 |
| CDY16735 | Canola | cytosol | 30.25 | 37.56 |
| CDY48128 | Canola | cytosol | 30.38 | 37.54 |
| CDX98304 | Canola | cytosol, plastid | 23.16 | 36.88 |
| CDY72529 | Canola | cytosol | 30.79 | 36.28 |
| CDX87315 | Canola | cytosol | 25.48 | 36.1 |
| CDY61276 | Canola | cytosol | 25.48 | 36.03 |
| CDY39973 | Canola | cytosol | 25.2 | 35.71 |
| CDY38671 | Canola | cytosol | 25.07 | 35.45 |
| CDX67749 | Canola | cytosol | 28.75 | 35.05 |
| CDY06034 | Canola | cytosol | 27.11 | 34.61 |
| CDX98301 | Canola | cytosol | 28.07 | 34.28 |
| CDX67949 | Canola | cytosol | 25.2 | 34.01 |
| CDX71948 | Canola | cytosol | 27.38 | 33.67 |
| CDY14843 | Canola | cytosol, plastid | 28.07 | 33.66 |
| CDY41747 | Canola | nucleus | 24.39 | 33.15 |
| CDX71944 | Canola | cytosol | 28.2 | 32.65 |
| CDY49232 | Canola | cytosol | 27.66 | 32.48 |
| CDY65864 | Canola | nucleus | 23.57 | 32.4 |
| CDY66221 | Canola | nucleus | 23.57 | 32.28 |
| CDX67752 | Canola | cytosol | 27.79 | 32.23 |
| CDY37696 | Canola | nucleus | 24.8 | 30.85 |
| CDY53786 | Canola | nucleus | 24.66 | 30.68 |
| CDY44720 | Canola | nucleus | 34.88 | 29.63 |
| CDX79384 | Canola | cytosol | 15.4 | 28.97 |
| CDX91943 | Canola | cytosol | 25.34 | 27.97 |
| CDY41597 | Canola | nucleus | 29.29 | 27.81 |
| CDX84112 | Canola | nucleus | 11.31 | 27.67 |
| CDY28671 | Canola | cytosol | 24.93 | 27.6 |
| CDX91036 | Canola | cytosol | 25.34 | 27.19 |
| CDX79541 | Canola | nucleus | 23.3 | 27.19 |
| CDX74304 | Canola | cytosol | 25.48 | 27.18 |
| CDX88990 | Canola | cytosol, plastid | 19.89 | 26.16 |
| CDX85591 | Canola | cytosol | 25.61 | 25.0 |
| CDY31513 | Canola | nucleus | 35.97 | 23.87 |
| CDX74101 | Canola | cytosol | 26.29 | 22.03 |
| CDY08048 | Canola | nucleus | 26.29 | 21.93 |
| CDY00570 | Canola | nucleus | 15.26 | 18.45 |
| CDX91039 | Canola | cytosol | 1.77 | 7.43 |
| CDX91037 | Canola | cytosol | 1.77 | 7.43 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078HJE0 | UniProt:A0A078HJE0 | EnsemblPlants:CDY37796 | ProteinID:CDY37796 |
| ProteinID:CDY37796.1 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 |
| GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00064734001 | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 |
| PFAM:PF00271 | ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 |
| PANTHER:PTHR24031:SF531 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 |
| UniParc:UPI0004EF439C | SEG:seg | : | : | : | : |
Description
BnaC04g00290DBnaC04g00290D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HJE0]
Coordinates
chrLK032408:-:311799..314841
Molecular Weight (calculated)
80205.0 Da
IEP (calculated)
5.436
GRAVY (calculated)
-0.512
Length
734 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNRNSQRFR GGDNSEDADV DEIDFIENEE EEEQAVQNGG GDNDDEDEID PLDAFMEGIH QEMKSAPPPK PKEKAERYKD DDDDHVVSFL KAKKDLGLTL
101: AADALNAGYN SDEEVYAAAK AVDAGMLEYD SDDNPIVVDK RKIEPIQALD HSSIDYEPIN KDFYEEVESI SRMSEQEALD YRQSLGIRVS GFDVPRPVKT
201: FEDCGFSSQI MSAIKKQGYE KPTTIQCQAL PVVLSGRDVI GIAKTGSGKT AAFVLPMIVH IMDQPELRRE EGPIGVICAP TRELAHQIYL EAKKFSKAYG
301: LRVSAVYGGM GKHEQFRELK AGCEIVVATP GRLIDMLKMK ALTMTRASYL VLDEADRMFD LGFEPQVRSI VGQIRPDRQT LLFSATMPWK VEKLAREILS
401: DPIRVTVGEA GMANEDITQV VNVIPSDADK LPWLLEKLPG MIDEGDVLVF ASKKATVDEI EAQLTLNAFK VAALHGDKDQ ASRMDTLQKF KSGVYHVLVA
501: TDVAARGLDI KSLKTVVNYD TAKDMDMHVH RIGRTGRAGD KDGVAYTLVT QREARFAGEL INSLVAAGQN VPPELMDLAM KDGRFKSKRD GRKGGGKKGR
601: GRGGGGGNRG VRGVDFGLGI GFNSESSGTL SQAAPSRKGV INSVRTGVMA QFKNSFVAAT PSNPQSQGGY PNKRPSLMGF VSGGTIGGDI GRTQTQTPPV
701: AASHNASLHN ASQKNPQSSE ERPRERKRRS GWDN
101: AADALNAGYN SDEEVYAAAK AVDAGMLEYD SDDNPIVVDK RKIEPIQALD HSSIDYEPIN KDFYEEVESI SRMSEQEALD YRQSLGIRVS GFDVPRPVKT
201: FEDCGFSSQI MSAIKKQGYE KPTTIQCQAL PVVLSGRDVI GIAKTGSGKT AAFVLPMIVH IMDQPELRRE EGPIGVICAP TRELAHQIYL EAKKFSKAYG
301: LRVSAVYGGM GKHEQFRELK AGCEIVVATP GRLIDMLKMK ALTMTRASYL VLDEADRMFD LGFEPQVRSI VGQIRPDRQT LLFSATMPWK VEKLAREILS
401: DPIRVTVGEA GMANEDITQV VNVIPSDADK LPWLLEKLPG MIDEGDVLVF ASKKATVDEI EAQLTLNAFK VAALHGDKDQ ASRMDTLQKF KSGVYHVLVA
501: TDVAARGLDI KSLKTVVNYD TAKDMDMHVH RIGRTGRAGD KDGVAYTLVT QREARFAGEL INSLVAAGQN VPPELMDLAM KDGRFKSKRD GRKGGGKKGR
601: GRGGGGGNRG VRGVDFGLGI GFNSESSGTL SQAAPSRKGV INSVRTGVMA QFKNSFVAAT PSNPQSQGGY PNKRPSLMGF VSGGTIGGDI GRTQTQTPPV
701: AASHNASLHN ASQKNPQSSE ERPRERKRRS GWDN
001: MSNRKFGMEG FGINRQTSYS FERSQAPQRL YVPPSSRGGD NSEDADLDNI DYMENEEAEE DIEEGGSAAA SGGEVDEIDP LDAFMEGIHQ EMKSAPPPKP
101: KEKLERYKDD DDDPVESYLK AKKDLGLTLA ADALNAGYNS DEEVYAAAKA VDAGMLDYDS DDNPIVVDKR KIEPITALDH SSIDYEPINK DFYEELESIS
201: GMTEQETTDY RQRLGIRVSG FDVHRPVKTF EDCGFSSQIM SAIKKQAYEK PTAIQCQALP IVLSGRDVIG IAKTGSGKTA AFVLPMIVHI MDQPELQRDE
301: GPIGVICAPT RELAHQIFLE AKKFSKAYGL RVSAVYGGMS KHEQFKELKA GCEIVVATPG RLIDMLKMKA LTMMRASYLV LDEADRMFDL GFEPQVRSIV
401: GQIRPDRQTL LFSATMPWKV EKLAREILSD PIRVTVGEVG MANEDITQVV NVIPSDAEKL PWLLEKLPGM IDEGDVLVFA SKKATVDEIE AQLTLNSFKV
501: AALHGDKDQA SRMETLQKFK SGVHHVLIAT DVAARGLDIK SLKTVVNYDI AKDMDMHVHR IGRTGRAGDR DGVAYTLVTQ REARFAGELV NSLVAAGQNV
601: PPELTDLAMK DGRFKSKRDG RKGGKKGRGG GGGNKGVRGV DFGLGIGFSS ESSRTPSSKA APSRSGAINS VRTGVMAQFK NSFVAATPSN PQNQAYPNKR
701: PSLMGFVSGG TIGGDMGRTQ SQAPPVAPTQ NASSHNSSQN HSQSSENRPR ERKRRSGWDN
101: KEKLERYKDD DDDPVESYLK AKKDLGLTLA ADALNAGYNS DEEVYAAAKA VDAGMLDYDS DDNPIVVDKR KIEPITALDH SSIDYEPINK DFYEELESIS
201: GMTEQETTDY RQRLGIRVSG FDVHRPVKTF EDCGFSSQIM SAIKKQAYEK PTAIQCQALP IVLSGRDVIG IAKTGSGKTA AFVLPMIVHI MDQPELQRDE
301: GPIGVICAPT RELAHQIFLE AKKFSKAYGL RVSAVYGGMS KHEQFKELKA GCEIVVATPG RLIDMLKMKA LTMMRASYLV LDEADRMFDL GFEPQVRSIV
401: GQIRPDRQTL LFSATMPWKV EKLAREILSD PIRVTVGEVG MANEDITQVV NVIPSDAEKL PWLLEKLPGM IDEGDVLVFA SKKATVDEIE AQLTLNSFKV
501: AALHGDKDQA SRMETLQKFK SGVHHVLIAT DVAARGLDIK SLKTVVNYDI AKDMDMHVHR IGRTGRAGDR DGVAYTLVTQ REARFAGELV NSLVAAGQNV
601: PPELTDLAMK DGRFKSKRDG RKGGKKGRGG GGGNKGVRGV DFGLGIGFSS ESSRTPSSKA APSRSGAINS VRTGVMAQFK NSFVAATPSN PQNQAYPNKR
701: PSLMGFVSGG TIGGDMGRTQ SQAPPVAPTQ NASSHNSSQN HSQSSENRPR ERKRRSGWDN
Arabidopsis Description
RH24DEAD-box ATP-dependent RNA helicase 24 [Source:UniProtKB/Swiss-Prot;Acc:O22907]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.