Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY44720 | Canola | nucleus | 84.61 | 75.69 |
| CDY72529 | Canola | cytosol | 43.47 | 53.93 |
| AT3G09620.2 | Thale cress | nucleus | 64.55 | 50.4 |
| TraesCS2D01G149500.1 | Wheat | nucleus | 50.19 | 47.03 |
| KRH77709 | Soybean | nucleus | 64.55 | 45.2 |
| CDY31513 | Canola | nucleus | 64.42 | 45.03 |
| KRH27757 | Soybean | nucleus | 64.42 | 44.99 |
| OQU79814 | Sorghum | nucleus | 55.89 | 43.77 |
| Os08t0159900-01 | Rice | extracellular, nucleus | 59.25 | 43.66 |
| PGSC0003DMT400011665 | Potato | nucleus | 61.71 | 42.78 |
| EES14596 | Sorghum | nucleus | 58.73 | 42.75 |
| Zm00001d024533_P001 | Maize | nucleus | 58.47 | 42.44 |
| HORVU0Hr1G020490.1 | Barley | nucleus | 58.09 | 42.12 |
| VIT_03s0038g04130.t01 | Wine grape | nucleus | 62.48 | 42.11 |
| TraesCS7B01G187000.1 | Wheat | nucleus | 57.57 | 41.86 |
| Solyc12g098700.1.1 | Tomato | nucleus | 61.71 | 41.59 |
| TraesCS7D01G294500.1 | Wheat | nucleus | 55.24 | 41.58 |
| TraesCS7A01G298800.3 | Wheat | nucleus | 57.44 | 41.42 |
| TraesCS2B01G170700.1 | Wheat | nucleus | 52.78 | 40.12 |
| HORVU2Hr1G025790.1 | Barley | nucleus | 52.13 | 39.55 |
| GSMUA_Achr10P... | Banana | cytosol | 48.9 | 37.76 |
| CDY10596 | Canola | nucleus | 22.12 | 34.27 |
| CDY02459 | Canola | cytosol | 21.99 | 34.07 |
| CDX83333 | Canola | nucleus | 25.87 | 31.4 |
| CDY47978 | Canola | plastid | 16.43 | 30.38 |
| CDY16735 | Canola | cytosol | 23.16 | 30.29 |
| CDY48128 | Canola | cytosol | 23.16 | 30.13 |
| CDX84672 | Canola | cytosol | 17.34 | 29.98 |
| CDY37796 | Canola | cytosol | 27.81 | 29.29 |
| CDX95719 | Canola | cytosol | 27.81 | 29.25 |
| CDX80096 | Canola | cytosol | 27.3 | 28.98 |
| CDY61276 | Canola | cytosol | 19.02 | 28.32 |
| CDX87315 | Canola | cytosol | 18.89 | 28.19 |
| CDY39973 | Canola | cytosol | 18.76 | 27.99 |
| CDX98304 | Canola | cytosol, plastid | 16.56 | 27.77 |
| CDY38671 | Canola | cytosol | 18.63 | 27.75 |
| CDX67949 | Canola | cytosol | 19.4 | 27.57 |
| CDY66221 | Canola | nucleus | 17.98 | 25.93 |
| CDY41747 | Canola | nucleus | 18.11 | 25.93 |
| CDY65864 | Canola | nucleus | 17.85 | 25.84 |
| CDY37696 | Canola | nucleus | 19.66 | 25.76 |
| CDY53786 | Canola | nucleus | 19.4 | 25.42 |
| CDX67749 | Canola | cytosol | 19.66 | 25.25 |
| CDY14843 | Canola | cytosol, plastid | 19.92 | 25.16 |
| CDX98301 | Canola | cytosol | 19.4 | 24.96 |
| CDX71948 | Canola | cytosol | 19.28 | 24.96 |
| CDY06034 | Canola | cytosol | 18.5 | 24.87 |
| CDX67752 | Canola | cytosol | 20.05 | 24.49 |
| CDY49232 | Canola | cytosol | 19.66 | 24.32 |
| CDX71944 | Canola | cytosol | 19.79 | 24.13 |
| CDX79541 | Canola | nucleus | 19.28 | 23.69 |
| CDX84112 | Canola | nucleus | 9.18 | 23.67 |
| CDY28671 | Canola | cytosol | 20.05 | 23.38 |
| CDX91943 | Canola | cytosol | 20.05 | 23.31 |
| CDX91036 | Canola | cytosol | 20.18 | 22.81 |
| CDX74304 | Canola | cytosol | 20.18 | 22.67 |
| CDX85591 | Canola | cytosol | 20.44 | 21.01 |
| CDX88990 | Canola | cytosol, plastid | 14.23 | 19.71 |
| CDY08048 | Canola | nucleus | 20.96 | 18.41 |
| CDX74101 | Canola | cytosol | 20.83 | 18.38 |
| CDX79384 | Canola | cytosol | 9.18 | 18.21 |
| CDY00570 | Canola | nucleus | 10.35 | 13.18 |
| CDX91039 | Canola | cytosol | 1.55 | 6.86 |
| CDX91037 | Canola | cytosol | 1.55 | 6.86 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078HUU8 | UniProt:A0A078HUU8 | EnsemblPlants:CDY41597 | ProteinID:CDY41597 |
| ProteinID:CDY41597.1 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | GO:GO:0005524 | EnsemblPlantsGene:GSBRNA2T00073244001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFscan:PS51192 |
| PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF25 | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 |
| SMART:SM00490 | SUPFAM:SSF52540 | UniParc:UPI0004EE7DDA | SEG:seg | : | : |
Description
BnaC05g43340DBnaC05g43340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HUU8]
Coordinates
chrLK032501:+:154304..157028
Molecular Weight (calculated)
86970.5 Da
IEP (calculated)
8.193
GRAVY (calculated)
-0.892
Length
773 amino acids
Sequence
(BLAST)
(BLAST)
001: MEENERSKSR KEDYEMKAKN RRDRYRDRGK DQKKGNGSEK NRRKRREKPK EKDKDRRRSR SDRFKSGTEE KGRRYREHGR NREEVEDGVK QLDEEAEKRR
101: RRLHEWQELK KKKEEAESES KSWTLEGDSD DDQGPPHGGD AYKMVDAVSE NEEVIDPLHA FMNTMVLPEV EKLSNAAASP LGEDSDYSET KDDDDQPSLD
201: KGDEVFMKTL KKTKGDKLTL VDHSNIEYQP FRKNFYIQVK DISNMTEQEV NTYRKELEIK VHGKDVPRPI KSWHQTGLTT RILNTIKKLN FQNPTPVQAQ
301: SLPIIMTGRD CIAVAPTGSG KTLSFVLPML RHIKDQPPVE PGDGPIGLVM APTRELVQQI HTDIKKFGKS LSIRSAAVYG GSGVAQQISE LRRGTEIIVC
401: TPGRMIDILS TNSGKVTNLQ RVTFLVMDEA DLEALARKVL NKPVEIQAGG RSVANKDITQ FEKCDGLYND LKNKCGYRCQ SLHGGKDQIH REVAVSEFKS
501: SVCNLLVATS VAARGLDVKG VELVVNFDAP NHYEEYVHRV GRTGRAGRKG CALTFVSEDD AKYAPDLVKA LERSEQVVPD GLKAMADGFM ERVREGVEKG
601: HGSGFGGSGF KFNDEEDVRR AAKEAQKKED GVEEEDKSEL EDVNGGGEIS QQKQQATMVV AAMLRGCART RQQYEAELEI NDFPQNARWK VTRRETLGSI
701: SDWSGAAITT RGQFFTPGRS PGPGERKLYL FVEGPSEESV KAAKGELMRV VNDVTNQALS FPGRSQHGRY SVL
101: RRLHEWQELK KKKEEAESES KSWTLEGDSD DDQGPPHGGD AYKMVDAVSE NEEVIDPLHA FMNTMVLPEV EKLSNAAASP LGEDSDYSET KDDDDQPSLD
201: KGDEVFMKTL KKTKGDKLTL VDHSNIEYQP FRKNFYIQVK DISNMTEQEV NTYRKELEIK VHGKDVPRPI KSWHQTGLTT RILNTIKKLN FQNPTPVQAQ
301: SLPIIMTGRD CIAVAPTGSG KTLSFVLPML RHIKDQPPVE PGDGPIGLVM APTRELVQQI HTDIKKFGKS LSIRSAAVYG GSGVAQQISE LRRGTEIIVC
401: TPGRMIDILS TNSGKVTNLQ RVTFLVMDEA DLEALARKVL NKPVEIQAGG RSVANKDITQ FEKCDGLYND LKNKCGYRCQ SLHGGKDQIH REVAVSEFKS
501: SVCNLLVATS VAARGLDVKG VELVVNFDAP NHYEEYVHRV GRTGRAGRKG CALTFVSEDD AKYAPDLVKA LERSEQVVPD GLKAMADGFM ERVREGVEKG
601: HGSGFGGSGF KFNDEEDVRR AAKEAQKKED GVEEEDKSEL EDVNGGGEIS QQKQQATMVV AAMLRGCART RQQYEAELEI NDFPQNARWK VTRRETLGSI
701: SDWSGAAITT RGQFFTPGRS PGPGERKLYL FVEGPSEESV KAAKGELMRV VNDVTNQALS FPGRSQHGRY SVL
001: MLEKSKSRKE NDRKDRDRSK KENGRRDTTE MRSRVKRCDS EEEERIRIRR DRKSSDFEEE EYERDSKRRG EDKGRGRRER DRDRGKYLKR DRERREREKE
101: KGRKKQKKER SREDCNEESD DVKCGLKRKR TERSRHGDDD VEKKTRDEQV EDEQKQLAEE VEKRRRRVQE WQELKRQNEE AQIESKGPET GKAWTLDGES
201: DDEVKSDSEM DVDRDTKLEN GGDAKMVASE NETAVTVSEN GGDRAADEDE IDPLDAFMNT MVLPEVEKLS NIVIDGILDF KMNGKETGDQ AKKGFNKAAL
301: GRIIQGEDSD SDYSEPKSDD DPSLDEDDEE FMKRVKKTKA EKLSLVDHSK IEYEPFRKNF YIEVKDISRM TQDAVNAYRK ELELKVHGKD VPRPIQFWHQ
401: TGLTSKILDT LKKLNYEKPM PIQAQALPII MSGRDCIGVA KTGSGKTLGF VLPMLRHIKD QPPVEAGDGP IGLVMAPTRE LVQQIYSDIR KFSKALGIIC
501: VPVYGGSGVA QQISELKRGT EIVVCTPGRM IDILCTSSGK ITNLRRVTYL VMDEADRMFD MGFEPQITRI VQNIRPDRQT VLFSATFPRQ VETLARKVLN
601: KPVEIQVGGR SVVNKDITQL VEIRPESERF SRLLELLGEW YEKGKVLVFV RSQEKSISDF KSDVCNLLIA TSVAARGLDV KELELVVNFD APNHYEDYVH
701: RVGRTGRAGR KGCAVTFISE DDAKYAPDLV KALELSEQPV PDDVKAVAEG FMAKVKQGIE QAHGTGYGGS GFKFNEEEDE VRKAAKKAQA KEYGFEEEKS
801: DSEDENDVVR KAGGDISQQQ ITLAQIAAIA SAASKAPVTA NQLLPNGGGL ATEPGIPPTD GAGRVAAMIA AANVQQYLAK IQADAIPEHY EAELEINDFP
901: QNARWKVTHK ETLGPISEWS GASITTRGKF YEAGRIPGPE ERKLYLFVEG PTEISVKTAK AELKRVLEDI TNQTFSLPGG AQSGRYSVL
101: KGRKKQKKER SREDCNEESD DVKCGLKRKR TERSRHGDDD VEKKTRDEQV EDEQKQLAEE VEKRRRRVQE WQELKRQNEE AQIESKGPET GKAWTLDGES
201: DDEVKSDSEM DVDRDTKLEN GGDAKMVASE NETAVTVSEN GGDRAADEDE IDPLDAFMNT MVLPEVEKLS NIVIDGILDF KMNGKETGDQ AKKGFNKAAL
301: GRIIQGEDSD SDYSEPKSDD DPSLDEDDEE FMKRVKKTKA EKLSLVDHSK IEYEPFRKNF YIEVKDISRM TQDAVNAYRK ELELKVHGKD VPRPIQFWHQ
401: TGLTSKILDT LKKLNYEKPM PIQAQALPII MSGRDCIGVA KTGSGKTLGF VLPMLRHIKD QPPVEAGDGP IGLVMAPTRE LVQQIYSDIR KFSKALGIIC
501: VPVYGGSGVA QQISELKRGT EIVVCTPGRM IDILCTSSGK ITNLRRVTYL VMDEADRMFD MGFEPQITRI VQNIRPDRQT VLFSATFPRQ VETLARKVLN
601: KPVEIQVGGR SVVNKDITQL VEIRPESERF SRLLELLGEW YEKGKVLVFV RSQEKSISDF KSDVCNLLIA TSVAARGLDV KELELVVNFD APNHYEDYVH
701: RVGRTGRAGR KGCAVTFISE DDAKYAPDLV KALELSEQPV PDDVKAVAEG FMAKVKQGIE QAHGTGYGGS GFKFNEEEDE VRKAAKKAQA KEYGFEEEKS
801: DSEDENDVVR KAGGDISQQQ ITLAQIAAIA SAASKAPVTA NQLLPNGGGL ATEPGIPPTD GAGRVAAMIA AANVQQYLAK IQADAIPEHY EAELEINDFP
901: QNARWKVTHK ETLGPISEWS GASITTRGKF YEAGRIPGPE ERKLYLFVEG PTEISVKTAK AELKRVLEDI TNQTFSLPGG AQSGRYSVL
Arabidopsis Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LRR1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.