CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49232	Canola	cytosol	96.37	97.76
CDX98304	Canola	cytosol, plastid	68.3	93.93
CDX67752	Canola	cytosol	90.85	91.0
AT3G58570.1	Thale cress	cytosol	90.06	88.39
CDY47978	Canola	plastid	58.2	88.28
CDY14843	Canola	cytosol, plastid	75.87	78.59
CDY06034	Canola	cytosol	70.03	77.22
CDX67749	Canola	cytosol	73.03	76.91
CDX71948	Canola	cytosol	72.4	76.88
CDX98301	Canola	cytosol	72.24	76.21
VIT_08s0007g07070.t01	Wine grape	cytosol, plastid	71.45	72.83
Solyc03g052980.2.1	Tomato	nucleus	68.61	71.08
KRH38030	Soybean	endoplasmic reticulum	67.98	70.54
KRH71800	Soybean	plastid	67.67	70.21
PGSC0003DMT400002828	Potato	cytosol	68.3	70.06
Os11t0599500-00	Rice	nucleus, plasma membrane	67.51	68.7
HORVU4Hr1G031280.1	Barley	cytosol, plastid	64.98	68.55
TraesCS4B01G126000.1	Wheat	cytosol, plastid	64.98	68.55
TraesCS4D01G148700.1	Wheat	golgi	64.98	68.55
Zm00001d048924_P001	Maize	plasma membrane	64.51	67.27
KXG28851	Sorghum	cytosol, plastid	64.98	65.92
TraesCS4A01G141400.1	Wheat	plastid	64.98	62.8
CDX88990	Canola	cytosol, plastid	44.16	50.18
CDX84672	Canola	cytosol	27.29	38.7
CDY00570	Canola	nucleus	35.33	36.9
CDY02459	Canola	cytosol	28.08	35.67
CDY10596	Canola	nucleus	28.08	35.67
CDY16735	Canola	cytosol	32.81	35.19
CDY48128	Canola	cytosol	32.97	35.19
CDY41747	Canola	nucleus	28.39	33.33
CDY65864	Canola	nucleus	27.6	32.77
CDY66221	Canola	nucleus	27.44	32.46
CDY38671	Canola	cytosol	26.03	31.79
CDX87315	Canola	cytosol	25.87	31.66
CDX67949	Canola	cytosol	27.13	31.62
CDY61276	Canola	cytosol	25.87	31.6
CDY39973	Canola	cytosol	25.71	31.47
CDY53786	Canola	nucleus	29.02	31.19
CDX83333	Canola	nucleus	30.91	30.77
CDX91036	Canola	cytosol	32.81	30.41
CDY37696	Canola	nucleus	28.23	30.34
CDX91943	Canola	cytosol	31.39	29.92
CDY28671	Canola	cytosol	30.91	29.56
CDX84112	Canola	nucleus	13.88	29.33
CDX74304	Canola	cytosol	31.23	28.78
CDX79541	Canola	nucleus	28.23	28.46
CDY37796	Canola	cytosol	32.65	28.2
CDX80096	Canola	cytosol	32.33	28.16
CDX95719	Canola	cytosol	32.33	27.89
CDX85591	Canola	cytosol	32.97	27.79
CDY72529	Canola	cytosol	26.66	27.13
CDX79384	Canola	cytosol	14.67	23.85
CDX74101	Canola	cytosol	30.91	22.37
CDY08048	Canola	nucleus	30.91	22.27
CDY44720	Canola	nucleus	29.34	21.53
CDY41597	Canola	nucleus	24.13	19.79
CDY31513	Canola	nucleus	29.34	16.82
CDX91039	Canola	cytosol	3.0	10.86
CDX91037	Canola	cytosol	3.0	10.86

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078C706	EnsemblPlants:CDX71944	ProteinID:CDX71944	ProteinID:CDX71944.1
InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005524
EnsemblPlantsGene:GSBRNA2T00155701001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF363	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
UniParc:UPI0004EEA7D5	SEG:seg	:	:	:	:

Description

BnaC08g29300D

Coordinates

chrLK031795:-:1424422..1427525

Molecular Weight (calculated)

67799.5 Da

IEP (calculated)

6.911

GRAVY (calculated)

-0.511

Length

634 amino acids

Sequence
(BLAST)

001: MSSSWADVSE PERPPPSGWG GGGYGDSRPS RTNYVPPHLR SRPPSSDFAA PSHGNERGGY GGRVGRGSGY VGRGGGGGGG WDRRDTETNP FGNDVNAEPA
101: AVNEQENNTG INFEAYEDIP IETSGDNVPP PVNTFAEIDL GEALNLNIQR CKYVKPTPVQ RNAIPILAAG RDLMACAQTG SGKTAAFCFP IISGIMKEEE
201: HVERPRGVRG VYPLAVILSP TRELACQIHD EARKFSYQTG VKVVVAYGGT PVNQQIRELE RGVDILVATP GRLNDLLERG RVSLQMVKYL ALDEADRMLD
301: MGFEPQIRKI VQQMDMPPPG VRQTMLFSAT FPREIQRLAS DFLSNYIFLA VGRVGSSTDL IVQRVEFVHD SDKRSHLMDL LHAQRDNGNQ RKQALTLVFV
401: ETKKGADSLE NWLCINGFPA TTIHGDRSQQ EREVALRSFK TGRTPILVAT DVAARGLDIP HVAHVVNFDL PNDIDDYVHR IGRTGRAGNS GLATAFFNDN
501: NTSMAKPLAE LMQEANQEVP DWLSRYASRA SFGGGKNKRS GGRFGGRDFR RESGGYGGGP RGGYGGGPGG GYGGDYGGGY GGGPGGGYGA MQGGYGTVPG
601: GGYGTIPGGG AYYGGGYGTV PNQGYGPGVA SAWD

Best Arabidopsis Sequence Match ( AT3G58570.1 )
(BLAST)

001: MSSNSWADVS ESERAPSGGG WGYSRPSRTN YVPPHLRSRT PSSEFVAPSP GNNDRGGYGG ANSGYGGRGQ GYGGRGSGYG GRGGPVGGWN ARSGGWDRRD
101: TETNPFGNDG NADPAVNEQE NTVINFEAYE DIPIETSGDN VPPPVNTFAE IDLGEALNLN IQRCKYVKPT PVQRNAIPIL AAGRDLMACA QTGSGKTAAF
201: CFPIISGIMK DQHIERPRGV RGVYPLAVIL SPTRELACQI HDEARKFSYQ TGVKVVVAYG GTPVNQQIRE LERGVDILVA TPGRLNDLLE RGRVSLQMVR
301: FLALDEADRM LDMGFEPQIR KIVQQMDMPP PGVRQTMLFS ATFPREIQRL ASDFLSNYIF LAVGRVGSST DLIVQRVEFV HDSDKRSHLM DLLHAQRENG
401: NQGKQALTLV FVETKKGADS LENWLCINGF PATTIHGDRS QQEREVALRS FKTGRTPILV ATDVAARGLD IPHVAHVVNF DLPNDIDDYV HRIGRTGRAG
501: NSGLATAFFN DNNTTMAKPL AELMQEANQE VPDWLTRYAS RASFGGGKNR RSGGRFGGRD FRRESFSRGG GGADYYGGGG GYGGVPGGGY GAMPGGYGPV
601: PGGGYGNVPG GGYAPYGRGG GAYYGPGGYG TVPNQGYGPG VASAWD

Arabidopsis Description

RH52DEAD-box ATP-dependent RNA helicase 52 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2F9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.