Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31513 | Canola | nucleus | 90.53 | 50.99 |
| Bra025856.1-P | Field mustard | nucleus | 90.21 | 47.99 |
| TraesCS2D01G149500.1 | Wheat | nucleus | 63.08 | 47.64 |
| AT1G20920.3 | Thale cress | nucleus | 84.27 | 45.03 |
| CDY44720 | Canola | nucleus | 62.12 | 44.79 |
| CDY41597 | Canola | nucleus | 53.93 | 43.47 |
| Os08t0159900-01 | Rice | extracellular, nucleus | 71.27 | 42.33 |
| EES14596 | Sorghum | nucleus | 72.07 | 42.28 |
| OQU79814 | Sorghum | nucleus | 66.93 | 42.25 |
| Zm00001d024533_P001 | Maize | nucleus | 71.75 | 41.97 |
| PGSC0003DMT400011665 | Potato | nucleus | 74.8 | 41.79 |
| TraesCS7B01G187000.1 | Wheat | nucleus | 71.27 | 41.77 |
| TraesCS7A01G298800.3 | Wheat | nucleus | 71.27 | 41.42 |
| HORVU0Hr1G020490.1 | Barley | nucleus | 70.79 | 41.37 |
| VIT_03s0038g04130.t01 | Wine grape | nucleus | 75.92 | 41.24 |
| KRH77709 | Soybean | nucleus | 73.03 | 41.21 |
| KRH27757 | Soybean | nucleus | 72.55 | 40.83 |
| Solyc12g098700.1.1 | Tomato | nucleus | 74.8 | 40.63 |
| TraesCS7D01G294500.1 | Wheat | nucleus | 66.93 | 40.6 |
| TraesCS2B01G170700.1 | Wheat | nucleus | 63.08 | 38.64 |
| GSMUA_Achr10P... | Banana | cytosol | 61.32 | 38.16 |
| HORVU2Hr1G025790.1 | Barley | nucleus | 62.12 | 37.98 |
| CDY02459 | Canola | cytosol | 29.86 | 37.27 |
| CDY10596 | Canola | nucleus | 29.86 | 37.27 |
| CDY47978 | Canola | plastid | 23.76 | 35.41 |
| CDX84672 | Canola | cytosol | 24.72 | 34.45 |
| CDX83333 | Canola | nucleus | 34.67 | 33.91 |
| CDY16735 | Canola | cytosol | 32.1 | 33.84 |
| CDY48128 | Canola | cytosol | 31.78 | 33.33 |
| CDX98304 | Canola | cytosol, plastid | 24.56 | 33.19 |
| CDX87315 | Canola | cytosol | 26.81 | 32.24 |
| CDY61276 | Canola | cytosol | 26.81 | 32.18 |
| CDY39973 | Canola | cytosol | 26.65 | 32.05 |
| CDY38671 | Canola | cytosol | 26.16 | 31.41 |
| CDX80096 | Canola | cytosol | 36.28 | 31.04 |
| CDX67949 | Canola | cytosol | 26.97 | 30.88 |
| CDY37796 | Canola | cytosol | 36.28 | 30.79 |
| CDX95719 | Canola | cytosol | 35.96 | 30.48 |
| CDY65864 | Canola | nucleus | 24.88 | 29.03 |
| CDY66221 | Canola | nucleus | 24.88 | 28.92 |
| CDY41747 | Canola | nucleus | 24.88 | 28.7 |
| CDY06034 | Canola | cytosol | 25.84 | 28.0 |
| CDX71948 | Canola | cytosol | 26.48 | 27.64 |
| CDY49232 | Canola | cytosol | 27.45 | 27.36 |
| CDX67752 | Canola | cytosol | 27.77 | 27.33 |
| CDY14843 | Canola | cytosol, plastid | 26.65 | 27.12 |
| CDX67749 | Canola | cytosol | 26.16 | 27.08 |
| CDX98301 | Canola | cytosol | 25.84 | 26.79 |
| CDX71944 | Canola | cytosol | 27.13 | 26.66 |
| CDY37696 | Canola | nucleus | 25.2 | 26.61 |
| CDY53786 | Canola | nucleus | 25.2 | 26.61 |
| CDX84112 | Canola | nucleus | 12.52 | 26.0 |
| CDY28671 | Canola | cytosol | 26.16 | 24.59 |
| CDX91943 | Canola | cytosol | 26.16 | 24.51 |
| CDX91036 | Canola | cytosol | 26.48 | 24.12 |
| CDX88990 | Canola | cytosol, plastid | 21.51 | 24.01 |
| CDX74304 | Canola | cytosol | 26.16 | 23.69 |
| CDX79541 | Canola | nucleus | 23.6 | 23.37 |
| CDX85591 | Canola | cytosol | 26.48 | 21.94 |
| CDX79384 | Canola | cytosol | 13.48 | 21.54 |
| CDY08048 | Canola | nucleus | 27.13 | 19.2 |
| CDX74101 | Canola | cytosol | 26.97 | 19.18 |
| CDY00570 | Canola | nucleus | 14.45 | 14.83 |
| CDX91039 | Canola | cytosol | 1.93 | 6.86 |
| CDX91037 | Canola | cytosol | 1.93 | 6.86 |
Protein Annotations
| MapMan:16.4.7.1.2 | Gene3D:3.40.50.300 | GO:A0A078K0R5 | UniProt:A0A078K0R5 | EnsemblPlants:CDY72529 | ProteinID:CDY72529 |
| ProteinID:CDY72529.1 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 |
| GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00030415001 | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 |
| PFAM:PF00271 | ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 |
| PANTHER:PTHR24031:SF25 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 |
| UniParc:UPI0004EE31D5 | SEG:seg | : | : | : | : |
Description
BnaCnng78150DBnaCnng78150D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078K0R5]
Coordinates
chrLK051614:-:76..2076
Molecular Weight (calculated)
68927.5 Da
IEP (calculated)
9.294
GRAVY (calculated)
-0.320
Length
623 amino acids
Sequence
(BLAST)
(BLAST)
001: VKKTKAEKLA LVDHSKIEYE PFRKNFYIEV KEISRMTQEE VNAYRKEFEL KVHGKDVPRP IKSWHQTGLT SKILDTMNKL KYEKPMPIQT QALPIIMSGR
101: DCIGVAKTGS GKTLGFVLPM LRHIKDQPPV EAGEGPIGLV MAPTRELVQQ IHSDIKKFSK ALGIRCVPVY GGSGVAQQIS ELKRGTEIVV CTPGRMIDIL
201: CTSSGKITNL RRVTFLVMDE ADRMFDMGFE PQITRIIQNI RPDRQTVLFS ATFPRQVETL ARKVLNKPIE IQVGGRSVVN KDITQLVEVR PESERFLRLL
301: ELLGEWYEKG KILVFQSDRE STISDFKSNV CNILIATSVA ARGLDVKDLE LVVNYDAPNH YEDYVHRVGR TGRAGRKGCA VTFISEDDAK YAPDLVKALE
401: LSEQPIPDDL KAIADGFMVK VRQGTEQAHG TGYGGSGFKF NEEEEEVRKA AKKAQAKEYG FEEDKSDSED ENDVVRKAGT VAAIAAAAKA NAAAMNPPVT
501: TNQLLPNGGG LTSLPGTLPV TIPVLPNDGA GRAAAMVAAI NLQHNLARFK LMQCLNTMKQ NWRSMISRKT LVGRSPTKKH WVQYQTGLEP QLPLEVSFIL
601: LDVSLDLGNA SSTCSSKGLP KNP
101: DCIGVAKTGS GKTLGFVLPM LRHIKDQPPV EAGEGPIGLV MAPTRELVQQ IHSDIKKFSK ALGIRCVPVY GGSGVAQQIS ELKRGTEIVV CTPGRMIDIL
201: CTSSGKITNL RRVTFLVMDE ADRMFDMGFE PQITRIIQNI RPDRQTVLFS ATFPRQVETL ARKVLNKPIE IQVGGRSVVN KDITQLVEVR PESERFLRLL
301: ELLGEWYEKG KILVFQSDRE STISDFKSNV CNILIATSVA ARGLDVKDLE LVVNYDAPNH YEDYVHRVGR TGRAGRKGCA VTFISEDDAK YAPDLVKALE
401: LSEQPIPDDL KAIADGFMVK VRQGTEQAHG TGYGGSGFKF NEEEEEVRKA AKKAQAKEYG FEEDKSDSED ENDVVRKAGT VAAIAAAAKA NAAAMNPPVT
501: TNQLLPNGGG LTSLPGTLPV TIPVLPNDGA GRAAAMVAAI NLQHNLARFK LMQCLNTMKQ NWRSMISRKT LVGRSPTKKH WVQYQTGLEP QLPLEVSFIL
601: LDVSLDLGNA SSTCSSKGLP KNP
0001: MEVEKSKYRS EDLDVVEEEA DLKKSRRDRD RSNERKKDKG SEKRREKDRR KKRVKSSDSE DDYDRDDDEE REKRKEKERE RRRRDKDRVK RRSERRKSSD
0101: SEDDVEEEDE RDKRRVNEKE RGHREHERDR GKDRKRDRER EERKDKERER EKDRERRERE REEREKERVK ERERREREDG ERDRREREKE RGSRRNRERE
0201: RSREVGNEES DDDVKRDLKR RRKEGGERKE KEREKSVGRS SRHEDSPKRK SVEDNGEKKE KKTREEELED EQKKLDEEVE KRRRRVQEWQ ELKRKKEEAE
0301: SESKGDADGN EPKAGKAWTL EGESDDEEGH PEEKSETEMD VDEETKPEND GDAKMVDLEN ETAATVSESG GDGAVDEEEI DPLDAFMNTM VLPEVEKFCN
0401: GAPPPAVNDG TLDSKMNGKE SGDRPKKGFN KALGRIIQGE DSDSDYSEPK NDDDPSLDED DEEFMKRVKK TKAEKLSLVD HSKIEYEPFR KNFYIEVKDI
0501: SRMTQEEVNT YRKELELKVH GKDVPRPIKF WHQTGLTSKI LDTMKKLNYE KPMPIQTQAL PIIMSGRDCI GVAKTGSGKT LGFVLPMLRH IKDQPPVEAG
0601: DGPIGLVMAP TRELVQQIHS DIRKFSKPLG IRCVPVYGGS GVAQQISELK RGTEIVVCTP GRMIDILCTS SGKITNLRRV TFLVMDEADR MFDMGFEPQI
0701: TRIIQNIRPE RQTVLFSATF PRQVETLARK VLNKPVEIQV GGRSVVNKDI TQLVEVRPES DRFLRLLELL GEWSEKGKIL VFVQSQEKCD ALYRDMIKSS
0801: YPCLSLHGGK DQTDRESTIS DFKNDVCNLL IATSVAARGL DVKELELVVN FDAPNHYEDY VHRVGRTGRA GRKGCAVTFI SEDDAKYAPD LVKALELSEQ
0901: PVPDDLKALA DGFMVKVKQG IEQAHGTGYG GSGFKFNEEE EEVRKAAKKA QAKEYGFEED KSDSEDENDV VRKAGGGEIS QQQATFAQIA AIAAAAKAAA
1001: AAPVSAPVTA NQLLANGGGL AAMPGVLPVT VPTLPSEGAG RAAAMVAAMN LQHNLAKIQA DAMPEHYEAE LEINDFPQNA RWKVTHKETL GPISEWTGAA
1101: ITTRGQFYPT GRIPGPGERK LYLFIEGPSE KSVKHAKAEL KRVLEDITNQ AMSSLPGGAS GRYSVL
0101: SEDDVEEEDE RDKRRVNEKE RGHREHERDR GKDRKRDRER EERKDKERER EKDRERRERE REEREKERVK ERERREREDG ERDRREREKE RGSRRNRERE
0201: RSREVGNEES DDDVKRDLKR RRKEGGERKE KEREKSVGRS SRHEDSPKRK SVEDNGEKKE KKTREEELED EQKKLDEEVE KRRRRVQEWQ ELKRKKEEAE
0301: SESKGDADGN EPKAGKAWTL EGESDDEEGH PEEKSETEMD VDEETKPEND GDAKMVDLEN ETAATVSESG GDGAVDEEEI DPLDAFMNTM VLPEVEKFCN
0401: GAPPPAVNDG TLDSKMNGKE SGDRPKKGFN KALGRIIQGE DSDSDYSEPK NDDDPSLDED DEEFMKRVKK TKAEKLSLVD HSKIEYEPFR KNFYIEVKDI
0501: SRMTQEEVNT YRKELELKVH GKDVPRPIKF WHQTGLTSKI LDTMKKLNYE KPMPIQTQAL PIIMSGRDCI GVAKTGSGKT LGFVLPMLRH IKDQPPVEAG
0601: DGPIGLVMAP TRELVQQIHS DIRKFSKPLG IRCVPVYGGS GVAQQISELK RGTEIVVCTP GRMIDILCTS SGKITNLRRV TFLVMDEADR MFDMGFEPQI
0701: TRIIQNIRPE RQTVLFSATF PRQVETLARK VLNKPVEIQV GGRSVVNKDI TQLVEVRPES DRFLRLLELL GEWSEKGKIL VFVQSQEKCD ALYRDMIKSS
0801: YPCLSLHGGK DQTDRESTIS DFKNDVCNLL IATSVAARGL DVKELELVVN FDAPNHYEDY VHRVGRTGRA GRKGCAVTFI SEDDAKYAPD LVKALELSEQ
0901: PVPDDLKALA DGFMVKVKQG IEQAHGTGYG GSGFKFNEEE EEVRKAAKKA QAKEYGFEED KSDSEDENDV VRKAGGGEIS QQQATFAQIA AIAAAAKAAA
1001: AAPVSAPVTA NQLLANGGGL AAMPGVLPVT VPTLPSEGAG RAAAMVAAMN LQHNLAKIQA DAMPEHYEAE LEINDFPQNA RWKVTHKETL GPISEWTGAA
1101: ITTRGQFYPT GRIPGPGERK LYLFIEGPSE KSVKHAKAEL KRVLEDITNQ AMSSLPGGAS GRYSVL
Arabidopsis Description
RH42DEAD-box ATP-dependent RNA helicase 42 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0U8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.