Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030884.1-P | Field mustard | nucleus | 99.8 | 99.8 |
| CDY10596 | Canola | nucleus | 99.2 | 99.2 |
| AT1G55150.2 | Thale cress | cytosol | 91.18 | 86.5 |
| Solyc12g044860.1.1 | Tomato | nucleus | 80.96 | 84.34 |
| PGSC0003DMT400083878 | Potato | cytosol | 84.17 | 83.83 |
| GSMUA_Achr10P... | Banana | cytosol | 82.97 | 83.3 |
| KRH47127 | Soybean | nucleus | 84.57 | 83.23 |
| KXG31614 | Sorghum | cytosol | 81.96 | 83.13 |
| KRH44155 | Soybean | cytosol | 83.77 | 82.45 |
| Os01t0197200-01 | Rice | plasma membrane | 81.56 | 82.39 |
| VIT_09s0002g02100.t01 | Wine grape | cytosol | 83.77 | 81.17 |
| TraesCS3D01G106000.1 | Wheat | cytosol | 80.36 | 80.85 |
| TraesCS3A01G103700.1 | Wheat | cytosol | 80.36 | 80.85 |
| TraesCS3B01G121100.1 | Wheat | cytosol | 78.96 | 80.74 |
| KRH48684 | Soybean | cytosol, endoplasmic reticulum | 72.14 | 75.63 |
| Zm00001d039452_P002 | Maize | cytosol | 81.36 | 73.42 |
| HORVU3Hr1G018850.7 | Barley | cytosol | 76.95 | 70.2 |
| CDY16735 | Canola | cytosol | 65.93 | 55.67 |
| CDY48128 | Canola | cytosol | 66.13 | 55.56 |
| CDY47978 | Canola | plastid | 31.46 | 37.56 |
| CDY65864 | Canola | nucleus | 39.28 | 36.7 |
| CDY41747 | Canola | nucleus | 39.68 | 36.67 |
| CDY66221 | Canola | nucleus | 39.28 | 36.57 |
| CDX84672 | Canola | cytosol | 32.67 | 36.47 |
| CDY28671 | Canola | cytosol | 46.09 | 34.69 |
| CDX91943 | Canola | cytosol | 46.09 | 34.59 |
| CDX98304 | Canola | cytosol, plastid | 31.86 | 34.49 |
| CDX74304 | Canola | cytosol | 46.09 | 33.43 |
| CDX91036 | Canola | cytosol | 44.29 | 32.31 |
| CDX83333 | Canola | nucleus | 40.88 | 32.03 |
| CDX84112 | Canola | nucleus | 19.24 | 32.0 |
| CDY06034 | Canola | cytosol | 35.67 | 30.96 |
| CDX87315 | Canola | cytosol | 31.86 | 30.7 |
| CDY38671 | Canola | cytosol | 31.86 | 30.64 |
| CDY61276 | Canola | cytosol | 31.86 | 30.64 |
| CDX67949 | Canola | cytosol | 33.27 | 30.51 |
| CDY39973 | Canola | cytosol | 31.66 | 30.5 |
| CDY72529 | Canola | cytosol | 37.27 | 29.86 |
| CDX85591 | Canola | cytosol | 44.89 | 29.79 |
| CDX71948 | Canola | cytosol | 35.27 | 29.48 |
| CDX67749 | Canola | cytosol | 35.47 | 29.4 |
| CDX98301 | Canola | cytosol | 35.27 | 29.28 |
| CDY37696 | Canola | nucleus | 34.47 | 29.15 |
| CDY53786 | Canola | nucleus | 34.27 | 28.98 |
| CDY14843 | Canola | cytosol, plastid | 35.27 | 28.76 |
| CDX80096 | Canola | cytosol | 41.88 | 28.71 |
| CDY37796 | Canola | cytosol | 42.08 | 28.61 |
| CDY49232 | Canola | cytosol | 35.67 | 28.48 |
| CDX95719 | Canola | cytosol | 41.88 | 28.44 |
| CDX67752 | Canola | cytosol | 35.67 | 28.12 |
| CDX71944 | Canola | cytosol | 35.67 | 28.08 |
| CDX74101 | Canola | cytosol | 45.09 | 25.68 |
| CDX79541 | Canola | nucleus | 32.26 | 25.6 |
| CDY08048 | Canola | nucleus | 45.09 | 25.57 |
| CDX88990 | Canola | cytosol, plastid | 27.05 | 24.19 |
| CDY44720 | Canola | nucleus | 40.28 | 23.26 |
| CDX79384 | Canola | cytosol | 18.04 | 23.08 |
| CDY41597 | Canola | nucleus | 34.07 | 21.99 |
| CDY31513 | Canola | nucleus | 38.08 | 17.18 |
| CDY00570 | Canola | nucleus | 19.44 | 15.98 |
| CDX91039 | Canola | cytosol | 4.21 | 12.0 |
| CDX91037 | Canola | cytosol | 4.21 | 12.0 |
Protein Annotations
| MapMan:16.4.1.1.4 | Gene3D:3.40.50.300 | GO:A0A078EP70 | EnsemblPlants:CDY02459 | ProteinID:CDY02459 | ProteinID:CDY02459.1 |
| InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00114088001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 |
| ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF269 |
| InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | UniParc:UPI0004EF0971 |
| SEG:seg | : | : | : | : | : |
Description
BnaA08g00660D
Coordinates
chrLK031935:-:189110..191994
Molecular Weight (calculated)
55187.7 Da
IEP (calculated)
9.422
GRAVY (calculated)
-0.461
Length
499 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRYDSRTGD STSYRDRRSD TGFGGASGYG SSASKRESSS VGDESPKKPD LDGLTPFEKN FYVESPSVAA MTEAEVEEYR NKREITVEGR DIPKPVKSFR
101: DVGFPDYVLE EVKKAGFTEP TPIQSQGWPM ALKGRDLIGI AETGSGKTLS YLLPAIVHVN AQPILAPGDG PIVLVLAPTR ELAVQIQQEA SKFGSSSKIK
201: STCIYGGVPK GPQVRDLQKG VEIVIATPGR LIDMMESNNT NLRRVTYLVL DEADRMLDMG FDPQIRKIVS HIRPDRQTLY WSATWPKEVE QLSKKFLYNP
301: YKVIIGSSDL KANRAIRQIV DVISESQKYN KLVKLLEDIM DGSRILVFLD TKKGCDQITR QLRMDGWPAL SIHGDKSQAE RDWVLSEFRS GKSPIMTATD
401: VAARGLDVKD VKYVINYDFP GSLEDYVHRI GRTGRAGAKG TAYSFFTAAN ARFAKELVSI LEEAGQKVSH ELASMGRSTA PPPPGLGGFR DRGSRRAWS
101: DVGFPDYVLE EVKKAGFTEP TPIQSQGWPM ALKGRDLIGI AETGSGKTLS YLLPAIVHVN AQPILAPGDG PIVLVLAPTR ELAVQIQQEA SKFGSSSKIK
201: STCIYGGVPK GPQVRDLQKG VEIVIATPGR LIDMMESNNT NLRRVTYLVL DEADRMLDMG FDPQIRKIVS HIRPDRQTLY WSATWPKEVE QLSKKFLYNP
301: YKVIIGSSDL KANRAIRQIV DVISESQKYN KLVKLLEDIM DGSRILVFLD TKKGCDQITR QLRMDGWPAL SIHGDKSQAE RDWVLSEFRS GKSPIMTATD
401: VAARGLDVKD VKYVINYDFP GSLEDYVHRI GRTGRAGAKG TAYSFFTAAN ARFAKELVSI LEEAGQKVSH ELASMGRSTA PPPPGLGGFR DRGSRRAWS
001: MSRYDSRTGD STSYRDRRSD SGFGGTSSYG SSGSHTSSKK DNDGNESPRK LDLDGLTPFE KNFYVESPAV AAMTDTEVEE YRKLREITVE GKDIPKPVKS
101: FRDVGFPDYV LEEVKKAGFT EPTPIQSQGW PMAMKGRDLI GIAETGSGKT LSYLLPAIVH VNAQPMLAHG DGPIVLVLAP TRELAVQIQQ EASKFGSSSK
201: IKTTCIYGGV PKGPQVRDLQ KGVEIVIATP GRLIDMMESN NTNLRRVTYL VLDEADRMLD MGFDPQIRKI VSHIRPDRQT LYWSATWPKE VEQLSKKFLY
301: NPYKVIIGSS DLKANRAIRQ IVDVISESQK YNKLVKLLED IMDGSRILVF LDTKKGCDQI TRQLRMDGWP ALSIHGDKSQ AERDWVLSEF RSGKSPIMTA
401: TDVAARGLDV KDVKYVINYD FPGSLEDYVH RIGRTGRAGA KGTAYTFFTV ANARFAKELT NILQEAGQKV SPELASMGRS TAPPPPGLGG FRDRGSRRGW
501: S
101: FRDVGFPDYV LEEVKKAGFT EPTPIQSQGW PMAMKGRDLI GIAETGSGKT LSYLLPAIVH VNAQPMLAHG DGPIVLVLAP TRELAVQIQQ EASKFGSSSK
201: IKTTCIYGGV PKGPQVRDLQ KGVEIVIATP GRLIDMMESN NTNLRRVTYL VLDEADRMLD MGFDPQIRKI VSHIRPDRQT LYWSATWPKE VEQLSKKFLY
301: NPYKVIIGSS DLKANRAIRQ IVDVISESQK YNKLVKLLED IMDGSRILVF LDTKKGCDQI TRQLRMDGWP ALSIHGDKSQ AERDWVLSEF RSGKSPIMTA
401: TDVAARGLDV KDVKYVINYD FPGSLEDYVH RIGRTGRAGA KGTAYTFFTV ANARFAKELT NILQEAGQKV SPELASMGRS TAPPPPGLGG FRDRGSRRGW
501: S
Arabidopsis Description
DEA(D/H)-box RNA helicase family protein [Source:TAIR;Acc:AT1G55150]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.