Factsheet for GSMUA_Achr10P21180_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0197200-01	Rice	plasma membrane	87.32	87.85
PGSC0003DMT400083878	Potato	cytosol	87.53	86.83
KXG31614	Sorghum	cytosol	85.71	86.59
Solyc12g044860.1.1	Tomato	nucleus	83.3	86.43
TraesCS3D01G106000.1	Wheat	cytosol	85.31	85.48
TraesCS3A01G103700.1	Wheat	cytosol	85.11	85.28
TraesCS3B01G121100.1	Wheat	cytosol	83.5	85.04
VIT_09s0002g02100.t01	Wine grape	cytosol	87.12	84.08
KRH47127	Soybean	nucleus	85.31	83.63
KRH44155	Soybean	cytosol	84.91	83.23
CDY10596	Canola	nucleus	83.5	83.17
Bra030884.1-P	Field mustard	nucleus	83.3	82.97
CDY02459	Canola	cytosol	83.3	82.97
Zm00001d039452_P002	Maize	cytosol	85.92	77.22
KRH48684	Soybean	cytosol, endoplasmic reticulum	73.64	76.89
AT1G55150.2	Thale cress	cytosol	80.68	76.24
GSMUA_Achr8P01340_001	Banana	cytosol	57.75	74.93
HORVU3Hr1G018850.7	Barley	cytosol	81.49	74.04
GSMUA_Achr11P...	Banana	nucleus	39.64	34.14
GSMUA_Achr8P15350_001	Banana	plastid	37.22	31.2
GSMUA_Achr9P25390_001	Banana	mitochondrion	27.97	31.03
GSMUA_Achr5P14880_001	Banana	cytosol, plastid	37.63	30.86
GSMUA_Achr8P31890_001	Banana	nucleus	48.29	30.53
GSMUA_Achr1P24870_001	Banana	cytosol	40.04	30.02
GSMUA_Achr1P13000_001	Banana	cytosol	41.25	29.54
GSMUA_Achr6P29700_001	Banana	plastid	34.21	29.41
GSMUA_Achr2P09160_001	Banana	cytosol	31.99	29.07
GSMUA_Achr1P13820_001	Banana	mitochondrion	30.78	28.23
GSMUA_Achr3P01410_001	Banana	nucleus	28.37	26.76
GSMUA_Achr4P17320_001	Banana	plastid	27.16	26.47
GSMUA_Achr5P06030_001	Banana	nucleus	37.02	25.59
GSMUA_Achr1P15980_001	Banana	cytosol	49.3	23.2
GSMUA_Achr10P...	Banana	cytosol	34.81	17.28

Protein Annotations

MapMan:16.4.1.1.4	Gene3D:3.40.50.300	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr10G21180_001
EnsemblPlants:GSMUA_Achr10P21180_001	EnsemblPlants:GSMUA_Achr10T21180_001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	UniProt:M0RK43	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF269	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000296C225	SEG:seg

Description

DEAD-box ATP-dependent RNA helicase 20 [Source:GMGC_GENE;Acc:GSMUA_Achr10G21180_001]

Coordinates

chr10:+:26908457..26914487

Molecular Weight (calculated)

55323.1 Da

IEP (calculated)

8.995

GRAVY (calculated)

-0.457

Length

497 amino acids

Sequence
(BLAST)

001: MSRYDSRAAD PGSYRDRRSD AGFGGSSQSY SRGFEPSGKR DAGATGDLDG LLTPFEKNFY VEAPSVAAMT EEEVEAYRRK REITVEGRDV PKPVREFQDI
101: GFPEYVMQEI EKAGFVEPTP IQAQGWPMAL KGRDLIGIAE TGSGKTLAYL LPAIIHVNAQ PVLAPGDGPI VLVLAPTREL AVQIQQEATK FGASSKIKNT
201: CIYGGVPKGP QVRDLQKGVE IVIATPGRLI DMLESHHTNL RRVTYLVLDE ADRMLDMGFE PQMRKIISQI RPDRQTLYWS ATWPKEVEQL ARQFLYNPYK
301: VIIGSIDLKA NHAIHQRVEI VSENQKYNKL VKLLEDIMDG SRILIFMDTK KGCDQITRQL RTDGWPALSI HGDKSQAERD WVLSEFKSGK SPIMTATDVA
401: ARGLDVKDVK YVINYDFPGS LEDYVHRIGR TGRAGAKGTA YTFFTAANAR FAKDLIKILE EAGQKVNPEL AKMGRGPPPP AGHGGFRDRY GSSRQWS

Best Arabidopsis Sequence Match ( AT1G55150.1 )
(BLAST)

001: MSRYDSRTGD STSYRDRRSD SGFGGTSSYG SSGSHTSSKK DNDGNESPRK LDLDGLTPFE KNFYVESPAV AAMTDTEVEE YRKLREITVE GKDIPKPVKS
101: FRDVGFPDYV LEEVKKAGFT EPTPIQSQGW PMAMKGRDLI GIAETGSGKT LSYLLPAIVH VNAQPMLAHG DGPIVLVLAP TRELAVQIQQ EASKFGSSSK
201: IKTTCIYGGV PKGPQVRDLQ KGVEIVIATP GRLIDMMESN NTNLRRVTYL VLDEADRMLD MGFDPQIRKI VSHIRPDRQT LYWSATWPKE VEQLSKKFLY
301: NPYKVIIGSS DLKANRAIRQ IVDVISESQK YNKLVKLLED IMDGSRILVF LDTKKGCDQI TRQLRMDGWP ALSIHGDKSQ AERDWVLSEF RSGKSPIMTA
401: TDVAARGLDV KDVKYVINYD FPGSLEDYVH RIGRTGRAGA KGTAYTFFTV ANARFAKELT NILQEAGQKV SPELASMGRS TAPPPPGLGG FRDRGSRRGW
501: S

Arabidopsis Description

DEA(D/H)-box RNA helicase family protein [Source:TAIR;Acc:AT1G55150]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.