Factsheet for GSMUA_Achr9P25390_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 3
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P29700_001	Banana	plastid	70.76	54.84
GSMUA_Achr8P15350_001	Banana	plastid	66.29	50.08
GSMUA_Achr5P14880_001	Banana	cytosol, plastid	65.18	48.18
Os07t0202100-01	Rice	nucleus	66.07	46.4
Os03t0805200-01	Rice	plastid	64.96	45.68
TraesCS5D01G465100.1	Wheat	cytosol	63.17	44.5
TraesCS5A01G454600.1	Wheat	golgi	63.17	44.5
KXG37329	Sorghum	cytosol, plastid	62.95	44.41
TraesCS5B01G464500.2	Wheat	cytosol	62.72	44.32
KXG34634	Sorghum	plastid	62.95	43.65
Zm00001d007755_P001	Maize	plastid	62.95	43.59
HORVU5Hr1G109340.2	Barley	plastid	63.17	42.75
Zm00001d007757_P004	Maize	plastid	62.72	42.45
GSMUA_Achr8P01340_001	Banana	cytosol	31.47	36.81
GSMUA_Achr4P17320_001	Banana	plastid	40.4	35.49
GSMUA_Achr5P06030_001	Banana	nucleus	55.36	34.49
GSMUA_Achr10P...	Banana	cytosol	31.03	27.97
GSMUA_Achr11P...	Banana	nucleus	27.68	21.49
GSMUA_Achr1P13820_001	Banana	mitochondrion	25.45	21.03
GSMUA_Achr2P09160_001	Banana	cytosol	25.67	21.02
GSMUA_Achr8P31890_001	Banana	nucleus	33.48	19.08
GSMUA_Achr1P13000_001	Banana	cytosol	28.12	18.16
GSMUA_Achr1P24870_001	Banana	cytosol	25.89	17.5
GSMUA_Achr3P01410_001	Banana	nucleus	18.75	15.94
GSMUA_Achr1P15980_001	Banana	cytosol	32.81	13.92
GSMUA_Achr10P...	Banana	cytosol	27.68	12.39

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
EnsemblPlantsGene:GSMUA_Achr9G25390_001	EnsemblPlants:GSMUA_Achr9P25390_001	EnsemblPlants:GSMUA_Achr9T25390_001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	UniProt:M0U3E6	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192
PFscan:PS51194	PANTHER:PTHR24031	PANTHER:PTHR24031:SF363	SMART:SM00490	SUPFAM:SSF52540	TMHMM:TMhelix
UniParc:UPI000296DE34	SEG:seg	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G25390_001]

Coordinates

chr9:-:29899859..29905213

Molecular Weight (calculated)

49352.6 Da

IEP (calculated)

8.590

GRAVY (calculated)

-0.235

Length

448 amino acids

Sequence
(BLAST)

001: MGKIKNGFFL FGTNWKKVLG IKLGKEKLNG ELRDLERGVD ILVATPGRLV DMLERARVSL QHIKYLALDE ADRMLDMGFE PQIRRIVEQM DMPSRGQRQT
101: MLFSATFPKE IQAIFFLDLI LYFPFQISVT CVLKEQNNGL VTSFVDNAEG ERNNTNLIGL FLVSLFIGHW FVYLSYFQSS HVFSRLASDF LYSYIFLAVG
201: RVGSSTDLIV QRVEFVLDSD KRSHLMDLLH AQRDSGAHGK QALTLVFVET KRGADSLEHW LCMNGFPATT IHGDRSQQER EHALRTFKSG ATPILVATDV
301: AARGLDIPHV AHVINFDLPN DIDDYVHRIG RTGRAGNSGL ATAFFNESNA SLARSLSELM QEANQEVPQW LSRYAAARSH GGGGGGRNRR SGGPRFGGRD
401: FRRDSAFSRG GGGDYYSGGG GYGGGSYGAS SGYGSGGYGS AGVTSAWD

Best Arabidopsis Sequence Match ( AT2G42520.1 )
(BLAST)

001: MSASWADVAD SENTGSGSSN QNSHPSRPAY VPPHLRNRPA ASEPVAPLPA NDRVGYGGPP SGSRWAPGGS GVGVGGGGGY RADAGRPGSG SGYGGRGGGG
101: WNNRSGGWDR REREVNPFEN DDSEPEPAFT EQDNTVINFD AYEDIPIETS GDNVPPPVNT FAEIDLGEAL NLNIRRCKYV KPTPVQRHAI PILLEGRDLM
201: ACAQTGSGKT AAFCFPIISG IMKDQHVQRP RGSRTVYPLA VILSPTRELA SQIHDEAKKF SYQTGVKVVV AYGGTPINQQ LRELERGVDI LVATPGRLND
301: LLERARVSMQ MIRFLALDEA DRMLDMGFEP QIRKIVEQMD MPPRGVRQTL LFSATFPREI QRLAADFLAN YIFLAVGRVG SSTDLIVQRV EFVLDSDKRS
401: HLMDLLHAQR ENGIQGKQAL TLVFVETKRG ADSLENWLCI NGFPATSIHG DRTQQEREVA LKAFKSGRTP ILVATDVAAR GLDIPHVAHV VNFDLPNDID
501: DYVHRIGRTG RAGKSGLATA FFNDGNTSLA RPLAELMQEA NQEVPEWLTR YASRSSFGGG KNRRSGGRFG GRDFRREGSF GSGRGGYGGG GGGYGGGGGY
601: GGGGGYGGGG GYGGGYGGAS SGGYGGEPPS AWD

Arabidopsis Description

RH37DEAD-box ATP-dependent RNA helicase 37 [Source:UniProtKB/Swiss-Prot;Acc:Q84W89]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.