Factsheet for GSMUA_Achr6P29700_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P15350_001	Banana	plastid	82.18	80.1
GSMUA_Achr5P14880_001	Banana	cytosol, plastid	78.89	75.25
GSMUA_Achr9P25390_001	Banana	mitochondrion	54.84	70.76
Os03t0805200-01	Rice	plastid	75.95	68.92
Os07t0202100-01	Rice	nucleus	75.78	68.65
KXG37329	Sorghum	cytosol, plastid	72.84	66.3
KXG34634	Sorghum	plastid	73.7	65.94
TraesCS5D01G465100.1	Wheat	cytosol	71.97	65.41
TraesCS5A01G454600.1	Wheat	golgi	71.97	65.41
TraesCS5B01G464500.2	Wheat	cytosol	71.63	65.3
Zm00001d007755_P001	Maize	plastid	72.84	65.07
Zm00001d007757_P004	Maize	plastid	73.36	64.05
GSMUA_Achr4P17320_001	Banana	plastid	56.4	63.92
HORVU5Hr1G109340.2	Barley	plastid	71.63	62.54
GSMUA_Achr5P06030_001	Banana	nucleus	59.52	47.84
GSMUA_Achr8P01340_001	Banana	cytosol	28.55	43.08
GSMUA_Achr10P...	Banana	cytosol	29.41	34.21
GSMUA_Achr11P...	Banana	nucleus	27.34	27.38
GSMUA_Achr2P09160_001	Banana	cytosol	25.61	27.06
GSMUA_Achr1P13820_001	Banana	mitochondrion	24.57	26.2
GSMUA_Achr1P13000_001	Banana	cytosol	30.28	25.22
GSMUA_Achr1P24870_001	Banana	cytosol	28.89	25.19
GSMUA_Achr8P31890_001	Banana	nucleus	32.7	24.05
GSMUA_Achr3P01410_001	Banana	nucleus	21.8	23.91
GSMUA_Achr1P15980_001	Banana	cytosol	32.18	17.61
GSMUA_Achr10P...	Banana	cytosol	24.91	14.39

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSMUA_Achr6G29700_001	EnsemblPlants:GSMUA_Achr6P29700_001	EnsemblPlants:GSMUA_Achr6T29700_001	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	UniProt:M0TBB5	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR24031	PANTHER:PTHR24031:SF363	SMART:SM00487
SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000295D25D	SEG:seg	:	:

Description

DEAD-box ATP-dependent RNA helicase 37 [Source:GMGC_GENE;Acc:GSMUA_Achr6G29700_001]

Coordinates

chr6:-:29876507..29886422

Molecular Weight (calculated)

62003.4 Da

IEP (calculated)

6.388

GRAVY (calculated)

-0.418

Length

578 amino acids

Sequence
(BLAST)

001: MRSSWADAVA NAETSAAAAG ASPNNVAPVA VGPSRGGRAA YVPPHLRNRP PSVESPALPL ADGPSGARQP PASGALPAGG NRWGGGPIRD QEANPFANDD
101: ETTEEVFDSQ ENSGINFDAY EDIPVETSGD NVPPPVNTFA EIDLGDALNE NIRRCKYTAA FCFPIISGIM RGPPAQRQIR SRTAYPHALI LSPTRELSIQ
201: IHEEARKFAY QTGVRVVVAY GGAPINQQLR DLERGVDILV ATPGRLVDLL ERARVSLQHI GYLALDEADR MLDMGFEPQI RRIVEQMDMP PCGQRQTMLF
301: SATFPKEIQR LASDFLYNYI FLAVGRVGSS TDLIVQRVEF VLDSDKRSHL MDLLHAQRDS GAHGKQALTL VFVETKRGAD SLEHWLCTNG FPATTIHGDR
401: TQQEREQALR SFKSGATPIL VATDVAARGL DIPHVAHVIN FDLPNDIDDY VHRIGRTGRA GKTGLATAFF NESNSSLARS LSELMQEANQ EVPQWLSRFA
501: ATRSYGGGGG RNRRSGGARF GGRDFRREPS SKGGGGDYYG GGSSGYGGGS SGYGGGSYGA SSGYGGGYGS SGVTSAWD

Best Arabidopsis Sequence Match ( AT2G42520.3 )
(BLAST)

001: MSASWADVAD SENTGSGSSN QNSHPSRPAY VPPHLRNRPA ASEPVAPLPA NDRVGYGGPP SGSRWAPGGS GVGVGGGGGY RADAGRPGSG SGYGGRGGGG
101: WNNRSGGWDR REREVNPFEN DDSEPEPAFT EQDNTVINFD AYEDIPIETS GDNVPPPVNT FAEIDLGEAL NLNIRRCKYV KPTPVQRHAI PILLEGRDLM
201: ACAQTGSGKT AAFCFPIISG IMKDQHVQRP RGSRTVYPLA VILSPTRELA SQIHDEAKKF SYQTGVKVVV AYGGTPINQQ LRELERGVDI LVATPGRLND
301: LLERARVSMQ MIRFLALDEA DRMLDMGFEP QIRKIVEQMD MPPRGVRQTL LFSATFPREI QRLAADFLAN YIFLAVGRVG SSTDLIVQRV EFVLDSDKRS
401: HLMDLLHAQR ENGIQGKQAL TLVFVETKRG ADSLENWLCI NGFPATSIHG DRTQQEREVA LKAFKSGRTP ILVATDVAAR GLDIPHVAHV VNFDLPNDID
501: DYVHRIGRTG RAGKSGLATA FFNDGNTSLA RPLAELMQEA NQEVPEWLTR YASRSSFGGG KNRRSGGRFG GRDFRREGSF GSGRGGYGGG GGGYGGGGGY
601: GGGGGYGGGG GYGGGYGGAS SGGYGGEPPS AWD

Arabidopsis Description

RH37DEAD-box ATP-dependent RNA helicase 37 [Source:UniProtKB/Swiss-Prot;Acc:Q84W89]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.