CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007755_P001	Maize	plastid	94.89	94.75
Zm00001d007757_P004	Maize	plastid	95.05	92.75
Os07t0202100-01	Rice	nucleus	85.91	86.99
KXG37329	Sorghum	cytosol, plastid	80.03	81.42
GSMUA_Achr8P15350_001	Banana	plastid	69.5	75.72
GSMUA_Achr6P29700_001	Banana	plastid	65.94	73.7
GSMUA_Achr5P14880_001	Banana	cytosol, plastid	68.42	72.94
KXG28851	Sorghum	cytosol, plastid	66.56	68.8
GSMUA_Achr4P17320_001	Banana	plastid	52.63	66.67
GSMUA_Achr9P25390_001	Banana	mitochondrion	43.65	62.95
OQU76674	Sorghum	cytosol	49.54	56.44
KXG31614	Sorghum	cytosol	28.48	37.4
EES04084	Sorghum	cytosol	30.96	34.6
EER96257	Sorghum	cytosol	25.85	32.62
OQU83862	Sorghum	nucleus	28.17	28.35
OQU86230	Sorghum	cytosol	31.27	28.25
EER92293	Sorghum	cytosol	26.93	28.16
KXG32714	Sorghum	nucleus	32.35	26.42
EER94974	Sorghum	cytosol, mitochondrion, nucleus, plastid	30.19	25.46
KXG37746	Sorghum	nucleus	29.57	23.64
OQU79814	Sorghum	nucleus	28.95	18.95
EES14596	Sorghum	nucleus	29.88	18.17
OQU84042	Sorghum	cytosol	35.14	16.35

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1B6Q9P8	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	EnsemblPlants:KXG34634	ProteinID:KXG34634	ProteinID:KXG34634.1	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF363	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	EnsemblPlantsGene:SORBI_3002G071000	SUPFAM:SSF52540
UniParc:UPI000220709C	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:7116653..7120886

Molecular Weight (calculated)

68333.2 Da

IEP (calculated)

8.665

GRAVY (calculated)

-0.422

Length

646 amino acids

Sequence
(BLAST)

001: MRSSWADSVA NAEESAPATA AANGSVVTHG NSRPTRSSYV PPHLRGRPAG AGFDTQAGLV APAQGGPLPS AAAQPSGQGA AVGGPRWAGI VNGGGGSVGA
101: PRQGYGGAGG GGGRGAWNSR PGGWDRRDRE PDPFAKAEAE EVDFEGQENT GINFDAYEDI PVETSGHDVP APANTFAEID LGDALNENIR RCKYVKPTPV
201: QRYAIPISIA GRDLMACAQT GSGKTAAFCF PIISGILKSP RPQQRSRSSR TAFPLALILS PTRELSVQIH EEARKFAYQT GVRVVVAYGG APITNQLRDL
301: ERGVEILVAT PGRLMDLLER ARVSLQSIRY LALDEADRML DMGFEPQIRK IVEGMDMPQR GERQTMLFSA TFPKEIQRMA ADFLADYIFL AVGRVGSSTD
401: LIVQRVEFVL DSDKRSYLMD LLHAQKANGT HGKHALTLVF VETKRGADAL EDWLFRNGFP ATSIHGDRTQ QEREHALRSF KSGATPILVA TDVAARGLDI
501: PHVAHVINFD LPNDIDDYVH RIGRTGRAGK SGLATAFFNE SNTTLARPLS DLMKEANQEV PKWLEGYAAR SAYGGGGGRN RRQGGGARFG GRDFRRDRGS
601: GGGYGGGSFG GGGGGGGYGG SSGYGGGYGG GGGSGYGGGQ SMSSWD

Best Arabidopsis Sequence Match ( AT2G42520.3 )
(BLAST)

001: MSASWADVAD SENTGSGSSN QNSHPSRPAY VPPHLRNRPA ASEPVAPLPA NDRVGYGGPP SGSRWAPGGS GVGVGGGGGY RADAGRPGSG SGYGGRGGGG
101: WNNRSGGWDR REREVNPFEN DDSEPEPAFT EQDNTVINFD AYEDIPIETS GDNVPPPVNT FAEIDLGEAL NLNIRRCKYV KPTPVQRHAI PILLEGRDLM
201: ACAQTGSGKT AAFCFPIISG IMKDQHVQRP RGSRTVYPLA VILSPTRELA SQIHDEAKKF SYQTGVKVVV AYGGTPINQQ LRELERGVDI LVATPGRLND
301: LLERARVSMQ MIRFLALDEA DRMLDMGFEP QIRKIVEQMD MPPRGVRQTL LFSATFPREI QRLAADFLAN YIFLAVGRVG SSTDLIVQRV EFVLDSDKRS
401: HLMDLLHAQR ENGIQGKQAL TLVFVETKRG ADSLENWLCI NGFPATSIHG DRTQQEREVA LKAFKSGRTP ILVATDVAAR GLDIPHVAHV VNFDLPNDID
501: DYVHRIGRTG RAGKSGLATA FFNDGNTSLA RPLAELMQEA NQEVPEWLTR YASRSSFGGG KNRRSGGRFG GRDFRREGSF GSGRGGYGGG GGGYGGGGGY
601: GGGGGYGGGG GYGGGYGGAS SGGYGGEPPS AWD

Arabidopsis Description

RH37DEAD-box ATP-dependent RNA helicase 37 [Source:UniProtKB/Swiss-Prot;Acc:Q84W89]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.