CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039673_P002	Maize	cytosol	89.09	90.87
TraesCS3A01G130200.4	Wheat	cytosol	69.09	76.0
TraesCS3B01G149300.8	Wheat	cytosol	68.67	75.54
TraesCS3D01G131100.11	Wheat	cytosol	68.67	75.19
Os01t0172200-01	Rice	cytosol	75.94	71.54
HORVU3Hr1G024610.13	Barley	cytosol, plastid	69.09	69.87
AT3G01540.2	Thale cress	cytosol	54.41	62.84
Bra040699.1-P	Field mustard	cytosol	53.15	62.4
Bra001004.1-P	Field mustard	cytosol	55.24	62.11
Solyc12g035130.1.1	Tomato	nucleus	51.89	60.62
PGSC0003DMT400080614	Potato	nucleus	51.89	60.52
CDX91943	Canola	cytosol	53.85	57.89
Bra023478.1-P	Field mustard	cytosol	54.27	57.4
CDY28671	Canola	cytosol	53.01	57.16
CDX91036	Canola	cytosol	54.27	56.73
CDX74304	Canola	cytosol	53.99	56.1
Solyc02g086660.2.1	Tomato	nucleus	54.97	55.67
AT5G14610.1	Thale cress	cytosol	54.69	54.92
PGSC0003DMT400001391	Potato	cytosol	54.41	53.29
KRG93254	Soybean	endoplasmic reticulum	56.78	52.32
KRH56577	Soybean	nucleus	56.64	52.26
CDX85591	Canola	cytosol	54.55	51.86
KXG32714	Sorghum	nucleus	54.83	49.56
KXG31614	Sorghum	cytosol	32.87	47.76
VIT_14s0066g01020.t01	Wine grape	cytosol	56.92	47.16
EES04084	Sorghum	cytosol	33.99	42.04
OQU76674	Sorghum	cytosol	28.39	35.8
EER96257	Sorghum	cytosol	24.06	33.59
KXG28851	Sorghum	cytosol, plastid	27.97	32.0
KXG37329	Sorghum	cytosol, plastid	27.83	31.34
KXG34634	Sorghum	plastid	28.25	31.27
OQU84042	Sorghum	cytosol	53.15	27.38
EER92293	Sorghum	cytosol	23.22	26.86
OQU83862	Sorghum	nucleus	22.8	25.39
EER94974	Sorghum	cytosol, mitochondrion, nucleus, plastid	26.71	24.93
KXG37746	Sorghum	nucleus	24.48	21.66
OQU79814	Sorghum	nucleus	27.13	19.66
EES14596	Sorghum	nucleus	26.29	17.7

Protein Annotations

Gene3D:2.20.70.10	Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:8078479	UniProt:A0A1W0VVT0	InterPro:DEAD/DEAH_box_helicase_dom
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001202
InterPro:IPR001650	InterPro:IPR014001	EnsemblPlants:OQU86230	ProteinID:OQU86230	ProteinID:OQU86230.1	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	ScanProsite:PS01159	PFscan:PS50020	PFscan:PS51192
PFscan:PS51194	PANTHER:PTHR24031	PANTHER:PTHR24031:SF255	InterPro:RNA-helicase_DEAD-box_CS	SMART:SM00456	SMART:SM00487
SMART:SM00490	EnsemblPlantsGene:SORBI_3003G050700	SUPFAM:SSF51045	SUPFAM:SSF52540	unigene:Sbi.10669	UniParc:UPI0009DC8600
InterPro:WW_dom	InterPro:WW_dom_sf	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:4601660..4608337

Molecular Weight (calculated)

77969.1 Da

IEP (calculated)

9.727

GRAVY (calculated)

-0.601

Length

715 amino acids

Sequence
(BLAST)

001: MESSASAPAS KGPRYAPPDP TLPKPWRGLI DGNTGYLYFW NPETKVTQYE RPVAAVPSSP SQPPGYSRHD EKPRSSAPSE QRSEAAVSRQ QYVPPSDNRA
101: RNDHSEPRSA SGVNLSQSAP STNQVSQAAN GSQMSTEAYR AKHEITIVGN EAPAPFMTFQ STGFPSEILR EALQVNNPSR GSTCLLSCAA SCGLKQLTIL
201: FSLQLHDVWL GFCVLQAGFS APTPIQAQSW PIAIKGRDIV AVAKTGSGKT LGYLLPGFIL LKRLQHNSRE GPTVLVLSPT RELATQIQDE AIKFGRSSRI
301: SSTCLYGGAP KGPQLRELER GADVVVATPG RLNDILEMNK VSLRQVSYLV LDEADRMLDM GFEPQIRKIV KQIPPRRQTL MYTATWPKEV RRIASDLLNN
401: PVQVNIGNTD QLVANKSITQ HVEVIPHMEK SRRLDQILRS QDPGSKIIIF CSTKRMCDQL ARNLSRQYGA SAIHGDKSQS ERDSVLNDFR SGRCPVLVAT
501: DVAARGLDIK DIRVVVNYDF PTGVEDYVHR IGRTGRAGAT GSAYTFFGDQ DSKYASDLVK ILEGANQSVP QQLKEMALRG GYGGRSRRWA SSDDSYGGQG
601: YGAKRSTDSF NNSSFGNQAG GGSSFHSSFH NSSSGNQFGD TTSFHGSYDN SSRNNQTGDN ASFPPSSSNN QSGDGLSFHE RFYGSRGRDQ SKTSNDGFRA
701: RSRSPPGKPV GVSNW

Best Arabidopsis Sequence Match ( AT3G01540.4 )
(BLAST)

001: MAATAAASVV RYAPEDHTLP KPWKGLIDDR TGYLYFWNPE TNVTQYEKPT PSLPPKFSPA VSVSSSVQVQ QTDAYAPPKD DDKYSRGSER VSRFSEGGRS
101: GPPYSNGAAN GVGDSAYGAA STRVPLPSSA PASELSPEAY SRRHEITVSG GQVPPPLMSF EATGFPPELL REVLSAGFSA PTPIQAQSWP IAMQGRDIVA
201: IAKTGSGKTL GYLIPGFLHL QRIRNDSRMG PTILVLSPTR ELATQIQEEA VKFGRSSRIS CTCLYGGAPK GPQLRDLERG ADIVVATPGR LNDILEMRRI
301: SLRQISYLVL DEADRMLDMG FEPQIRKIVK EIPTKRQTLM YTATWPKGVR KIAADLLVNP AQVNIGNVDE LVANKSITQH IEVVAPMEKQ RRLEQILRSQ
401: EPGSKVIIFC STKRMCDQLT RNLTRQFGAA AIHGDKSQPE RDNVLNQFRS GRTPVLVATD VAARGLDVKD IRAVVNYDFP NGVEDYVHRI GRTGRAGATG
501: QAFTFFGDQD SKHASDLIKI LEGANQRVPP QIREMATRGG GGMNKFSRWG PPSGGRGRGG DSGYGGRGSF ASRDSRSSNG WGRERERSRS PERFNRAPPP
601: SSTGSPPRSF HETMMMKHR

Arabidopsis Description

RH14DEAD-box ATP-dependent RNA helicase 14 [Source:UniProtKB/Swiss-Prot;Acc:Q8H136]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.