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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX91036 Canola cytosol 79.78 83.04
Bra023478.1-P Field mustard cytosol 78.79 82.99
CDX85591 Canola cytosol 85.53 80.98
AT3G01540.2 Thale cress cytosol 70.08 80.61
PGSC0003DMT400080614 Potato nucleus 57.02 66.23
Solyc12g035130.1.1 Tomato nucleus 56.6 65.85
Solyc02g086660.2.1 Tomato nucleus 61.52 62.04
KRH56577 Soybean nucleus 65.45 60.13
KRG93254 Soybean endoplasmic reticulum 65.31 59.92
PGSC0003DMT400001391 Potato cytosol 61.38 59.86
TraesCS3A01G130200.4 Wheat cytosol 53.09 58.15
TraesCS3B01G149300.8 Wheat cytosol 52.95 58.0
TraesCS3D01G131100.11 Wheat cytosol 52.95 57.73
Zm00001d008725_P003 Maize cytosol 55.76 57.29
Zm00001d039673_P002 Maize cytosol 54.92 55.78
OQU86230 Sorghum cytosol 54.92 54.69
HORVU3Hr1G024610.13 Barley cytosol, plastid 53.37 53.75
Os01t0172200-01 Rice cytosol 55.62 52.17
VIT_14s0066g01020.t01 Wine grape cytosol 63.06 52.03
GSMUA_Achr8P31890_001 Banana nucleus 55.76 50.51
Zm00001d011155_P012 Maize nucleus 55.48 50.45
KXG32714 Sorghum nucleus 55.2 49.68
Zm00001d044510_P002 Maize mitochondrion 54.92 48.75
Os01t0549400-01 Rice nucleus 53.23 47.85
TraesCS3D01G202500.3 Wheat nucleus 52.67 46.35
TraesCS3A01G194200.1 Wheat nucleus 50.42 45.85
TraesCS3B01G230800.1 Wheat nucleus 50.28 45.61
AT1G55150.2 Thale cress cytosol 32.16 43.54
AT5G63120.2 Thale cress cytosol 34.27 41.29
AT1G28180.1 Thale cress cytosol 19.24 37.23
AT3G06480.1 Thale cress cytosol 54.07 35.39
AT1G31970.1 Thale cress cytosol 26.4 35.01
AT2G42520.2 Thale cress nucleus, plastid 29.78 33.49
AT3G58510.2 Thale cress cytosol 28.51 33.17
AT3G58570.1 Thale cress cytosol 29.63 32.66
AT4G33370.1 Thale cress cytosol 22.61 29.7
AT5G51280.1 Thale cress cytosol 22.47 27.07
AT2G47330.1 Thale cress cytosol 26.83 25.13
AT2G33730.1 Thale cress nucleus 24.58 23.87
AT3G09620.2 Thale cress nucleus 25.42 18.28
AT1G20920.3 Thale cress nucleus 25.98 15.87
Protein Annotations
Gene3D:2.20.70.10Gene3D:3.40.50.300MapMan:35.1EntrezGene:831313ProteinID:AED92054.1ArrayExpress:AT5G14610
EnsemblPlantsGene:AT5G14610RefSeq:AT5G14610TAIR:AT5G14610RefSeq:AT5G14610-TAIR-GEnsemblPlants:AT5G14610.1TAIR:AT5G14610.1
Unigene:At.43560InterPro:DEAD/DEAH_box_helicase_domUniProt:F4K6V1GO:GO:0000166GO:GO:0003674GO:GO:0003676
GO:GO:0003824GO:GO:0004386GO:GO:0005488GO:GO:0005515GO:GO:0005524GO:GO:0016787
InterPro:Helicase_ATP-bdInterPro:Helicase_CInterPro:IPR001202InterPro:IPR001650InterPro:IPR014001InterPro:IPR014014
RefSeq:NP_196965.2InterPro:P-loop_NTPasePFAM:PF00270PFAM:PF00271PFAM:PF00397PO:PO:0000005
PO:PO:0000013PO:PO:0000037PO:PO:0000084PO:PO:0000230PO:PO:0000293PO:PO:0001054
PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095
PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007611PO:PO:0007616PO:PO:0008019
PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029
PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052
PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022ScanProsite:PS00039ScanProsite:PS01159
PFscan:PS50020PFscan:PS51192PFscan:PS51194PFscan:PS51195PANTHER:PTHR24031PANTHER:PTHR24031:SF255
InterPro:RNA-helicase_DEAD-box_CSInterPro:RNA_helicase_DEAD_Q_motifSMART:SM00456SMART:SM00487SMART:SM00490SUPFAM:SSF51045
SUPFAM:SSF52540UniParc:UPI00005DC27CInterPro:WW_domInterPro:WW_dom_sfSEG:seg:
Description
DEAD box RNA helicase family protein [Source:UniProtKB/TrEMBL;Acc:F4K6V1]
Coordinates
chr5:+:4710563..4715069
Molecular Weight (calculated)
76261.4 Da
IEP (calculated)
9.796
GRAVY (calculated)
-0.418
Length
712 amino acids
Sequence
(BLAST)
001: MAATASAIRY APEDPNLPKP WKGLVDSRTG YLYFWNPETN VTQYERPASS APPKLAAIPV SSSVQTNQQS SSGFNSGKED DKYGRGSDGP KSDSGSRFNE
101: AGRTGPISSN DAASGLGNAS SGGSSARGPP SSAAGNELSP EAYCRKHEIT VSGGQVPPPL MSFEATGLPN ELLRECPNFM PYALSFVPGA IFALGGANVV
201: RCATSLGFLQ IIWSALFGGP NFLRCPPAAG FNSYLVLPAN GRMVYSAGFS APSPIQAQSW PIAMQNRDIV AIAKTGSGKT LGYLIPGFMH LQRIHNDSRM
301: GPTILVLSPT RELATQIQVE ALKFGKSSKI SCACLYGGAP KGPQLKEIER GVDIVVATPG RLNDILEMKR ISLHQVSYLV LDEADRMLDM GFEPQIRKIV
401: NEVPTKRQTL MYTATWPKEV RKIAADLLVN PAQVNIGNVD ELVANKSITQ TIEVLAPMEK HSRLEQILRS QEPGSKIIIF CSTKRMCDQL ARNLTRTFGA
501: AAIHGDKSQA ERDDVLNQFR SGRTPVLVAT DVAARGLDVK DIRVVVNYDF PNGVEDYVHR IGRTGRAGAT GLAYTFFGDQ DAKHASDLIK ILEGANQKVP
601: PQVREMATRG GGGMNKFRRW GTPSSGGGGG RGGYGDSGYG GRGESGYGSR GDSGYGGRGD SGGRGSWAPS RDSGSSGWGR ERSRSPERFR GGPPSTSSPP
701: RSFHEAMMMK NR
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.