Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra035857.1-P | Field mustard | cytosol | 92.05 | 92.05 |
| CDY48128 | Canola | cytosol | 92.39 | 91.92 |
| CDY16735 | Canola | cytosol | 91.71 | 91.71 |
| GSMUA_Achr8P01340_001 | Banana | cytosol | 52.79 | 81.46 |
| KRH03228 | Soybean | nucleus | 70.22 | 68.94 |
| EES04084 | Sorghum | cytosol | 67.34 | 68.86 |
| KRH57127 | Soybean | endoplasmic reticulum, nucleus | 70.9 | 68.46 |
| TraesCS3B01G451900.1 | Wheat | cytosol | 65.31 | 67.25 |
| HORVU3Hr1G092610.1 | Barley | cytosol | 65.31 | 67.25 |
| HORVU3Hr1G092600.1 | Barley | cytosol | 65.31 | 67.25 |
| TraesCS3D01G412400.2 | Wheat | cytosol | 65.31 | 67.13 |
| TraesCS3A01G416900.1 | Wheat | cytosol | 65.14 | 67.07 |
| Solyc03g112350.2.1 | Tomato | nucleus | 72.76 | 66.05 |
| AT1G55150.2 | Thale cress | cytosol | 55.33 | 62.17 |
| Zm00001d042416_P002 | Maize | extracellular, plasma membrane | 67.01 | 62.07 |
| PGSC0003DMT400046821 | Potato | cytosol | 70.9 | 58.36 |
| VIT_17s0000g09130.t01 | Wine grape | cytosol | 59.39 | 57.45 |
| AT1G28180.1 | Thale cress | cytosol | 25.21 | 40.49 |
| AT3G01540.2 | Thale cress | cytosol | 41.12 | 39.26 |
| AT1G31970.1 | Thale cress | cytosol | 34.52 | 37.99 |
| AT5G14610.1 | Thale cress | cytosol | 41.29 | 34.27 |
| AT3G58510.2 | Thale cress | cytosol | 34.69 | 33.5 |
| AT2G42520.2 | Thale cress | nucleus, plastid | 35.7 | 33.33 |
| AT3G58570.1 | Thale cress | cytosol | 34.69 | 31.73 |
| AT4G33370.1 | Thale cress | cytosol | 28.93 | 31.55 |
| AT5G51280.1 | Thale cress | cytosol | 30.63 | 30.63 |
| AT2G47330.1 | Thale cress | cytosol | 38.24 | 29.74 |
| AT2G33730.1 | Thale cress | nucleus | 30.12 | 24.28 |
| AT3G06480.1 | Thale cress | cytosol | 42.47 | 23.07 |
| AT3G09620.2 | Thale cress | nucleus | 35.19 | 21.01 |
| AT1G20920.3 | Thale cress | nucleus | 36.55 | 18.52 |
Protein Annotations
| MapMan:16.4.1.1.4 | Gene3D:3.40.50.300 | EntrezGene:836432 | UniProt:A0A178UF05 | ProteinID:AED97706.1 | ProteinID:AED97707.1 |
| EMBL:AJ010476 | EMBL:AK226611 | ArrayExpress:AT5G63120 | EnsemblPlantsGene:AT5G63120 | RefSeq:AT5G63120 | TAIR:AT5G63120 |
| RefSeq:AT5G63120-TAIR-G | EnsemblPlants:AT5G63120.2 | TAIR:AT5G63120.2 | EMBL:AY060589 | Unigene:At.27361 | ProteinID:BAB10554.1 |
| EMBL:BT000610 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0000184 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003729 | GO:GO:0003824 | GO:GO:0004004 | GO:GO:0004386 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 |
| GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006364 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0010501 | GO:GO:0016787 | GO:GO:0042254 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | RefSeq:NP_568964.1 | RefSeq:NP_974985.1 | ProteinID:OAO91682.1 |
| InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007098 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF269 |
| UniProt:Q8W4R3 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 |
| UniParc:UPI000034F336 | SEG:seg | : | : | : | : |
Description
RH30DEAD-box ATP-dependent RNA helicase 30 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4R3]
Coordinates
chr5:-:25318642..25322284
Molecular Weight (calculated)
64625.1 Da
IEP (calculated)
10.097
GRAVY (calculated)
-0.510
Length
591 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSYDRRFAD PNSYRQRSGA PVGSSQPMDP SAAPYNPRYT GGGGGYGPSP VMAGDNSGYN RYPSFQPPSG GFSVGRGGGR GGYGQYGDRN GGGNWGGGGG
101: RGGSSKRELD SVSLPKQNFG NLVHFEKNFY VESPTVQAMT EQDVAMYRTE RDISVEGRDV PKPMKMFQDA NFPDNILEAI AKLGFTEPTP IQAQGWPMAL
201: KGRDLIGIAE TGSGKTLAYL LPALVHVSAQ PRLGQDDGPI VLILAPTREL AVQIQEESRK FGLRSGVRST CIYGGAPKGP QIRDLRRGVE IVIATPGRLI
301: DMLECQHTNL KRVTYLVLDE ADRMLDMGFE PQIRKIVSQI RPDRQTLLWS ATWPREVETL ARQFLRDPYK AIIGSTDLKA NQSINQVIEI VPTPEKYNRL
401: LTLLKQLMDG SKILIFVETK RGCDQVTRQL RMDGWPALAI HGDKTQSERD RVLAEFKSGR SPIMTATDVA ARGLDVKDIK CVVNYDFPNT LEDYIHRIGR
501: TGRAGAKGMA FTFFTHDNAK FARELVKILQ EAGQVVPPTL SALVRSSGSG YGGSGGGRNF RPRGGGRGGG FGDKRSRSTS NFVPHGGKRT W
101: RGGSSKRELD SVSLPKQNFG NLVHFEKNFY VESPTVQAMT EQDVAMYRTE RDISVEGRDV PKPMKMFQDA NFPDNILEAI AKLGFTEPTP IQAQGWPMAL
201: KGRDLIGIAE TGSGKTLAYL LPALVHVSAQ PRLGQDDGPI VLILAPTREL AVQIQEESRK FGLRSGVRST CIYGGAPKGP QIRDLRRGVE IVIATPGRLI
301: DMLECQHTNL KRVTYLVLDE ADRMLDMGFE PQIRKIVSQI RPDRQTLLWS ATWPREVETL ARQFLRDPYK AIIGSTDLKA NQSINQVIEI VPTPEKYNRL
401: LTLLKQLMDG SKILIFVETK RGCDQVTRQL RMDGWPALAI HGDKTQSERD RVLAEFKSGR SPIMTATDVA ARGLDVKDIK CVVNYDFPNT LEDYIHRIGR
501: TGRAGAKGMA FTFFTHDNAK FARELVKILQ EAGQVVPPTL SALVRSSGSG YGGSGGGRNF RPRGGGRGGG FGDKRSRSTS NFVPHGGKRT W
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.