Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74101 | Canola | cytosol | 70.5 | 87.56 |
| CDY08048 | Canola | nucleus | 70.31 | 86.93 |
| Bra001200.1-P | Field mustard | cytosol | 83.55 | 86.41 |
| AT3G01540.2 | Thale cress | cytosol | 35.11 | 61.71 |
| AT5G14610.1 | Thale cress | cytosol | 35.39 | 54.07 |
| VIT_05s0020g00470.t01 | Wine grape | cytosol | 56.43 | 53.25 |
| KRH36905 | Soybean | nucleus | 55.15 | 51.5 |
| KRH11875 | Soybean | endoplasmic reticulum | 55.33 | 50.12 |
| Solyc01g057760.2.1 | Tomato | nucleus | 53.22 | 47.42 |
| GSMUA_Achr1P15980_001 | Banana | cytosol | 44.76 | 46.12 |
| AT1G55150.2 | Thale cress | cytosol | 20.77 | 42.97 |
| AT5G63120.2 | Thale cress | cytosol | 23.07 | 42.47 |
| TraesCS3D01G100900.1 | Wheat | cytosol | 48.71 | 40.03 |
| TraesCS3A01G100200.1 | Wheat | cytosol | 48.81 | 39.81 |
| Zm00001d007719_P010 | Maize | cytosol | 48.9 | 39.32 |
| Zm00001d048632_P001 | Maize | cytosol | 49.91 | 39.29 |
| OQU84042 | Sorghum | cytosol | 50.0 | 39.19 |
| TraesCS3B01G117000.1 | Wheat | cytosol | 48.25 | 38.98 |
| HORVU3Hr1G018170.3 | Barley | cytosol | 48.35 | 38.06 |
| AT1G28180.1 | Thale cress | cytosol | 12.5 | 36.96 |
| AT1G31970.1 | Thale cress | cytosol | 17.28 | 35.01 |
| AT2G42520.2 | Thale cress | nucleus, plastid | 19.76 | 33.97 |
| AT3G58510.2 | Thale cress | cytosol | 19.03 | 33.82 |
| AT3G58570.1 | Thale cress | cytosol | 19.58 | 32.97 |
| AT4G33370.1 | Thale cress | cytosol | 16.18 | 32.47 |
| AT5G51280.1 | Thale cress | cytosol | 15.44 | 28.43 |
| AT2G47330.1 | Thale cress | cytosol | 18.57 | 26.58 |
| AT2G33730.1 | Thale cress | nucleus | 15.72 | 23.33 |
| AT3G09620.2 | Thale cress | nucleus | 17.37 | 19.09 |
| AT1G20920.3 | Thale cress | nucleus | 17.92 | 16.72 |
Protein Annotations
| Gene3D:2.20.70.10 | Gene3D:3.40.50.300 | MapMan:35.1 | EntrezGene:819825 | UniProt:A0A178VH14 | ProteinID:AAF08584.1 |
| ProteinID:AEE74400.1 | ArrayExpress:AT3G06480 | EnsemblPlantsGene:AT3G06480 | RefSeq:AT3G06480 | TAIR:AT3G06480 | RefSeq:AT3G06480-TAIR-G |
| EnsemblPlants:AT3G06480.1 | TAIR:AT3G06480.1 | Unigene:At.27592 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0000184 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004004 | GO:GO:0004386 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005730 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0006139 | GO:GO:0006364 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0010501 | GO:GO:0016787 |
| GO:GO:0042254 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001202 | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:IPR014014 | RefSeq:NP_187299.1 | ProteinID:OAP05054.1 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 |
| PFAM:PF00397 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | ScanProsite:PS00039 |
| ScanProsite:PS01159 | PFscan:PS50020 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 |
| PANTHER:PTHR24031:SF255 | UniProt:Q9SQV1 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00456 | SMART:SM00487 |
| SMART:SM00490 | SUPFAM:SSF51045 | SUPFAM:SSF52540 | UniParc:UPI00000A2E92 | InterPro:WW_dom | InterPro:WW_dom_sf |
| SEG:seg | : | : | : | : | : |
Description
RH40DEAD-box ATP-dependent RNA helicase 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9SQV1]
Coordinates
chr3:-:1985455..1990244
Molecular Weight (calculated)
119564.0 Da
IEP (calculated)
10.405
GRAVY (calculated)
-0.795
Length
1088 amino acids
Sequence
(BLAST)
(BLAST)
0001: MATTEDTPAS AGPRYAPEDP TLPQPWKGLI DGSTGILYYW NPETNVTQYE RPSAPPPHSA TTPKLAQIPV PSSGQGHQAQ HEQAKPVGHV SQQHGFQQQP
0101: QQFPSQHVRP QMMQQHPAQQ MPQQSGQQFP QQQSQSMVPH PHGHPSVQTY QPTTQQQQQG MQNQHSQMPQ QLSHQYAHSQ QHYMGFRPHM QTQGLQNSHQ
0201: TPQGGPHGQQ FPSQQEYNSL APKREGDEFH GGKKTGFSQP HLPNSERSPS QNTHFEANAA SQKTNANLAM AQKCNGPQAN AAVTQFQQPG ANLIHQQLGP
0301: RAPNQMDQTM LHQKSHVSPF QSNNTYENNL QSRPGNDSYV NMRMEVPVRG AQPLHPAAMP KDIRISGGPP TNADPAMGQT GHGTYGHAGP AFPNKSLVRP
0401: HFVTSPDVPH LSPVEIYRKQ HEVTTTGENI PAPYITFESS GLPPEILREL LSAGFPSPTP IQAQTWPIAL QSRDIVAIAK TGSGKTLGYL IPAFILLRHC
0501: RNDSRNGPTV LILAPTRELA TQIQDEALRF GRSSRISCTC LYGGAPKGPQ LKELERGADI VVATPGRLND ILEMKMIDFQ QVSLLVLDEA DRMLDMGFEP
0601: QIRKIVNEIP PRRQTLMYTA TWPKEVRKIA SDLLVNPVQV NIGRVDELAA NKAITQYVEV VPQMEKERRL EQILRSQERG SKVIIFCSTK RLCDHLARSV
0701: GRHFGAVVIH GDKTQGERDW VLNQFRSGKS CVLIATDVAA RGLDIKDIRV VINYDFPTGV EDYVHRIGRT GRAGATGVAF TFFTEQDWKY APDLIKVLEG
0801: ANQQVPPQVR DIAMRGGGGG GPGYSQDRRG MVNRFDSGGG GTRWDSGGGF GGRGGGFSGR EGGFGGREGG FGGREGGFGG RGGRFGMRDD SFGRGGNRGR
0901: GFTGPDAGHM NVGGRGGFGR FGNNNNMESR GFGRGSGRGF GRGVGRFDNR RGRSRSRSPD LVRPRRRSSS YSRSRSRSGS YSRSRSRSRS WSRSRSRSPR
1001: HSRDRGGHNR SRSYSRSPSP VYERRDRAPR VSGFDIKPPV ESVVNLDMNA AAAIENVVPT SLSERQGNGV VESEVEAALV RPVVDEEP
0101: QQFPSQHVRP QMMQQHPAQQ MPQQSGQQFP QQQSQSMVPH PHGHPSVQTY QPTTQQQQQG MQNQHSQMPQ QLSHQYAHSQ QHYMGFRPHM QTQGLQNSHQ
0201: TPQGGPHGQQ FPSQQEYNSL APKREGDEFH GGKKTGFSQP HLPNSERSPS QNTHFEANAA SQKTNANLAM AQKCNGPQAN AAVTQFQQPG ANLIHQQLGP
0301: RAPNQMDQTM LHQKSHVSPF QSNNTYENNL QSRPGNDSYV NMRMEVPVRG AQPLHPAAMP KDIRISGGPP TNADPAMGQT GHGTYGHAGP AFPNKSLVRP
0401: HFVTSPDVPH LSPVEIYRKQ HEVTTTGENI PAPYITFESS GLPPEILREL LSAGFPSPTP IQAQTWPIAL QSRDIVAIAK TGSGKTLGYL IPAFILLRHC
0501: RNDSRNGPTV LILAPTRELA TQIQDEALRF GRSSRISCTC LYGGAPKGPQ LKELERGADI VVATPGRLND ILEMKMIDFQ QVSLLVLDEA DRMLDMGFEP
0601: QIRKIVNEIP PRRQTLMYTA TWPKEVRKIA SDLLVNPVQV NIGRVDELAA NKAITQYVEV VPQMEKERRL EQILRSQERG SKVIIFCSTK RLCDHLARSV
0701: GRHFGAVVIH GDKTQGERDW VLNQFRSGKS CVLIATDVAA RGLDIKDIRV VINYDFPTGV EDYVHRIGRT GRAGATGVAF TFFTEQDWKY APDLIKVLEG
0801: ANQQVPPQVR DIAMRGGGGG GPGYSQDRRG MVNRFDSGGG GTRWDSGGGF GGRGGGFSGR EGGFGGREGG FGGREGGFGG RGGRFGMRDD SFGRGGNRGR
0901: GFTGPDAGHM NVGGRGGFGR FGNNNNMESR GFGRGSGRGF GRGVGRFDNR RGRSRSRSPD LVRPRRRSSS YSRSRSRSGS YSRSRSRSRS WSRSRSRSPR
1001: HSRDRGGHNR SRSYSRSPSP VYERRDRAPR VSGFDIKPPV ESVVNLDMNA AAAIENVVPT SLSERQGNGV VESEVEAALV RPVVDEEP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.