Factsheet for AT3G58510.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98301	Canola	cytosol	87.91	89.52
Bra003341.1-P	Field mustard	cytosol	88.56	88.85
CDX67749	Canola	cytosol	87.09	88.54
CDY06034	Canola	cytosol	82.84	88.17
Bra007399.1-P	Field mustard	cytosol	87.42	87.56
CDX71948	Canola	cytosol	85.13	87.27
AT2G42520.2	Thale cress	nucleus, plastid	85.13	82.31
VIT_08s0007g07070.t01	Wine grape	cytosol, plastid	76.63	75.4
AT3G58570.1	Thale cress	cytosol	79.08	74.92
Solyc03g052980.2.1	Tomato	nucleus	72.39	72.39
KRH38030	Soybean	endoplasmic reticulum	72.22	72.34
PGSC0003DMT400002828	Potato	cytosol	72.55	71.84
KRH71800	Soybean	plastid	71.41	71.52
TraesCS4B01G126000.1	Wheat	cytosol, plastid	69.77	71.05
HORVU4Hr1G031280.1	Barley	cytosol, plastid	69.61	70.88
TraesCS4D01G148700.1	Wheat	golgi	69.61	70.88
Zm00001d048924_P001	Maize	plasma membrane	69.12	69.57
Os11t0599500-00	Rice	nucleus, plasma membrane	70.42	69.18
KXG28851	Sorghum	cytosol, plastid	69.28	67.84
TraesCS4A01G141400.1	Wheat	plastid	69.44	64.79
Bra014568.1-P	Field mustard	cytosol	62.09	57.06
CDX88990	Canola	cytosol, plastid	47.71	52.33
AT1G28180.1	Thale cress	cytosol	24.51	40.76
CDY00570	Canola	nucleus	40.2	40.53
AT5G63120.2	Thale cress	cytosol	33.5	34.69
AT1G31970.1	Thale cress	cytosol	29.09	33.15
AT1G55150.2	Thale cress	cytosol	27.94	32.51
AT3G01540.2	Thale cress	cytosol	32.19	31.83
AT4G33370.1	Thale cress	cytosol	26.31	29.7
AT5G51280.1	Thale cress	cytosol	27.94	28.93
AT5G14610.1	Thale cress	cytosol	33.17	28.51
AT2G47330.1	Thale cress	cytosol	33.33	26.84
AT2G33730.1	Thale cress	nucleus	30.72	25.65
AT3G06480.1	Thale cress	cytosol	33.82	19.03
AT3G09620.2	Thale cress	nucleus	29.9	18.48
AT1G20920.3	Thale cress	nucleus	32.19	16.9

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:825020	UniProt:A0A178VH17	ProteinID:AEE79791.1	ProteinID:AEE79792.1
ProteinID:AEE79793.1	EMBL:AJ010463	ArrayExpress:AT3G58510	EnsemblPlantsGene:AT3G58510	RefSeq:AT3G58510	TAIR:AT3G58510
RefSeq:AT3G58510-TAIR-G	EnsemblPlants:AT3G58510.2	TAIR:AT3G58510.2	EMBL:AY062446	EMBL:AY088091	EMBL:AY114637
Unigene:At.22801	ProteinID:CAB68189.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003729	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0005737	GO:GO:0005777	GO:GO:0005886	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0010501	GO:GO:0016020	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	RefSeq:NP_001030884.1	RefSeq:NP_567067.1	RefSeq:NP_974455.1
ProteinID:OAP04831.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PO:PO:0000013	PO:PO:0000037
PO:PO:0000230	PO:PO:0000293	PO:PO:0001016	PO:PO:0001017	PO:PO:0001054	PO:PO:0001078
PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098
PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019
PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029
PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052
PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025195
PO:PO:0025281	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF363
UniProt:Q8LA13	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI00000AB330
SEG:seg	:	:	:	:	:

Description

RH11DEAD-box ATP-dependent RNA helicase 11 [Source:UniProtKB/Swiss-Prot;Acc:Q8LA13]

Coordinates

chr3:+:21640045..21643795

Molecular Weight (calculated)

66029.5 Da

IEP (calculated)

6.655

GRAVY (calculated)

-0.493

Length

612 amino acids

Sequence
(BLAST)

001: MSASWADVAD SEKAVSQSKP PYVPPHLRNR PSEPVAAPLP QNDHAGYGGQ PAGSRWAPPS SGGGGASGGG YRNDGGRTGY GYGAGGGGGG GGGWNNRSGG
101: WDRREREVNP FGDDAELEPV FTEQENTGIN FDAYEDIPVE TSGGDVPPPV NTFADIDLGD ALNLNIRRCK YVRPTPVQRH AIPILLAERD LMACAQTGSG
201: KTAAFCFPII SGIMKDQHVE RPRGSRAVYP FAVILSPTRE LACQIHDEAK KFSYQTGVKV VVAYGGTPIH QQLRELERGC DILVATPGRL NDLLERARVS
301: MQMIRFLALD EADRMLDMGF EPQIRKIVEQ MDMPPRGVRQ TMLFSATFPS QIQRLAADFM SNYIFLAVGR VGSSTDLITQ RVEFVQESDK RSHLMDLLHA
401: QRETQDKQSL TLVFVETKRG ADTLENWLCM NEFPATSIHG DRTQQEREVA LRSFKTGRTP ILVATDVAAR GLDIPHVAHV VNFDLPNDID DYVHRIGRTG
501: RAGKSGIATA FFNENNAQLA RSLAELMQEA NQEVPEWLTR YASRASFGGG KKRSGGRFGG RDFRREGSYS RGGGGGGGGG GSDYYGGGGY GGGGYGGAPS
601: GGYGAGVTSA WD

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.