Factsheet for TraesCS4D01G148700.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 3
nucleus 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G126000.1	Wheat	cytosol, plastid	99.5	99.5
HORVU4Hr1G031280.1	Barley	cytosol, plastid	98.5	98.5
TraesCS4A01G141400.1	Wheat	plastid	99.0	90.7
Os11t0599500-00	Rice	nucleus, plasma membrane	85.86	82.83
Zm00001d048924_P001	Maize	plasma membrane	83.03	82.07
KXG28851	Sorghum	cytosol, plastid	84.36	81.12
CDY47978	Canola	plastid	55.57	79.9
KRG97325	Soybean	endoplasmic reticulum	72.38	73.6
KRH58901	Soybean	nucleus	74.54	72.96
KRH31589	Soybean	nucleus	73.21	72.85
VIT_13s0156g00070.t01	Wine grape	cytosol	74.54	72.61
KRH42811	Soybean	endoplasmic reticulum	74.71	72.54
CDX98304	Canola	cytosol, plastid	54.91	71.58
PGSC0003DMT400010921	Potato	cytosol	71.38	71.26
CDY06034	Canola	cytosol	68.05	71.13
Solyc01g005960.2.1	Tomato	plastid	70.22	69.87
PGSC0003DMT400081851	Potato	cytosol	70.22	69.87
CDX71948	Canola	cytosol	69.38	69.85
KRH38030	Soybean	endoplasmic reticulum	70.88	69.72
Bra016869.1-P	Field mustard	cytosol, plastid	70.55	69.62
AT3G58510.2	Thale cress	cytosol	70.88	69.61
Solyc03g052980.2.1	Tomato	nucleus	70.88	69.61
CDX67749	Canola	cytosol	69.72	69.6
CDY14843	Canola	cytosol, plastid	70.72	69.44
KRH71800	Soybean	plastid	70.55	69.39
CDX98301	Canola	cytosol	69.38	69.38
PGSC0003DMT400002828	Potato	cytosol	70.88	68.93
Bra003341.1-P	Field mustard	cytosol	69.72	68.69
Bra007399.1-P	Field mustard	cytosol	69.55	68.41
TraesCS5D01G465100.1	Wheat	cytosol	71.55	67.61
AT2G42520.2	Thale cress	nucleus, plastid	71.05	67.46
CDX67752	Canola	cytosol	69.05	65.56
CDY49232	Canola	cytosol	68.05	65.44
CDX71944	Canola	cytosol	68.55	64.98
Bra003343.1-P	Field mustard	cytosol	68.89	64.39
Bra007402.1-P	Field mustard	cytosol	68.39	64.02
AT3G58570.1	Thale cress	cytosol	68.55	63.78
Bra014568.1-P	Field mustard	cytosol	56.57	51.05
CDX88990	Canola	cytosol, plastid	44.09	47.49
TraesCS3D01G106000.1	Wheat	cytosol	29.12	35.28
CDY00570	Canola	nucleus	35.44	35.09
TraesCS3D01G412400.2	Wheat	cytosol	30.78	32.17
TraesCS5D01G125100.1	Wheat	nucleus	27.29	30.71
TraesCS3D01G131100.11	Wheat	cytosol	32.11	29.56
TraesCS5D01G159000.1	Wheat	cytosol	28.45	28.12
TraesCS4D01G184200.1	Wheat	mitochondrion	32.78	24.97
TraesCS3D01G202500.3	Wheat	nucleus	32.28	23.98
TraesCS4D01G041400.1	Wheat	nucleus	31.11	23.35
TraesCS2D01G149500.1	Wheat	nucleus	28.79	20.97
TraesCS7D01G294500.1	Wheat	nucleus	28.29	16.55
TraesCS3D01G100900.1	Wheat	cytosol	34.44	15.63

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF363	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS4D01G148700	EnsemblPlants:TraesCS4D01G148700.1	TIGR:cd00079	TIGR:cd00268	SEG:seg

Description

No Description!

Coordinates

chr4D:-:149998435..150002908

Molecular Weight (calculated)

64575.0 Da

IEP (calculated)

7.639

GRAVY (calculated)

-0.420

Length

601 amino acids

Sequence
(BLAST)

001: MAAPSRTSWA DVADAEHAPP APVPAAAPAT SNGPARADRS SYVPPHLRNR SSSTAPPVSS APPPRAAPGL LGRPTSGVGG RFGGGGAPPR RWDREPNPFG
101: DEEEVPAEPV PFDEHQNTGI NFEAYEDIPV ETSGREVPPA VGTFAEIDLG AALNDNIRRC KYVRPTPVQR HAIPISLAGR DLMACAQTGS GKTAAFCFPI
201: ISGIMRGPPV QRSQRGGSRT ACPLALILSP TRELSMQIHE EARKFSYQTG VRVVVAYGGA PITQQLRDLE RGVDILVATP GRLVDLLERA RVSLQSIRYL
301: ALDEADRMLD MGFEPQVRRI VEQMDMPPRG VRQTLLFSAT FPGEIQRMAS DFLENYIFLA VGRVGSSTEL IAQRVEFVQE ADKRSHLMDL LHAQRDSSEQ
401: GKQALTLVFV ETKRGADSLE NWLCTNGFPA TSIHGDRNQQ EREYALRSFK SGQTPILVAT DVAARGLDIP HVAHVVNFDL PNDIDDYVHR IGRTGRAGKS
501: GIATAFFNDN NSSMAKSLAD LMQESNQEVP AWLTRYAARP SYGGGGGRNR RGAVGGSRFG GRDFRRESSS FGKGGGASDY AGGSSYGGGG YGGAGAPSAW
601: D

Best Arabidopsis Sequence Match ( AT2G42520.3 )
(BLAST)

001: MSASWADVAD SENTGSGSSN QNSHPSRPAY VPPHLRNRPA ASEPVAPLPA NDRVGYGGPP SGSRWAPGGS GVGVGGGGGY RADAGRPGSG SGYGGRGGGG
101: WNNRSGGWDR REREVNPFEN DDSEPEPAFT EQDNTVINFD AYEDIPIETS GDNVPPPVNT FAEIDLGEAL NLNIRRCKYV KPTPVQRHAI PILLEGRDLM
201: ACAQTGSGKT AAFCFPIISG IMKDQHVQRP RGSRTVYPLA VILSPTRELA SQIHDEAKKF SYQTGVKVVV AYGGTPINQQ LRELERGVDI LVATPGRLND
301: LLERARVSMQ MIRFLALDEA DRMLDMGFEP QIRKIVEQMD MPPRGVRQTL LFSATFPREI QRLAADFLAN YIFLAVGRVG SSTDLIVQRV EFVLDSDKRS
401: HLMDLLHAQR ENGIQGKQAL TLVFVETKRG ADSLENWLCI NGFPATSIHG DRTQQEREVA LKAFKSGRTP ILVATDVAAR GLDIPHVAHV VNFDLPNDID
501: DYVHRIGRTG RAGKSGLATA FFNDGNTSLA RPLAELMQEA NQEVPEWLTR YASRSSFGGG KNRRSGGRFG GRDFRREGSF GSGRGGYGGG GGGYGGGGGY
601: GGGGGYGGGG GYGGGYGGAS SGGYGGEPPS AWD

Arabidopsis Description

RH37DEAD-box ATP-dependent RNA helicase 37 [Source:UniProtKB/Swiss-Prot;Acc:Q84W89]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.