CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 4
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42811	Soybean	endoplasmic reticulum	98.53	97.74
KRG97325	Soybean	endoplasmic reticulum	84.69	87.99
KRH31589	Soybean	nucleus	83.71	85.1
VIT_06s0004g00850.t01	Wine grape	cytosol	51.63	82.98
PGSC0003DMT400010921	Potato	cytosol	79.15	80.73
Solyc01g005960.2.1	Tomato	plastid	78.5	79.8
PGSC0003DMT400081851	Potato	cytosol	78.5	79.8
Os11t0599500-00	Rice	nucleus, plasma membrane	77.52	76.4
KRH38030	Soybean	endoplasmic reticulum	75.57	75.94
Zm00001d048924_P001	Maize	plasma membrane	74.43	75.16
KRH71800	Soybean	plastid	74.59	74.96
TraesCS4B01G126000.1	Wheat	cytosol, plastid	73.13	74.71
TraesCS4D01G148700.1	Wheat	golgi	72.96	74.54
HORVU4Hr1G031280.1	Barley	cytosol, plastid	72.8	74.38
KXG28851	Sorghum	cytosol, plastid	74.1	72.8
TraesCS4A01G141400.1	Wheat	plastid	72.96	68.29
KRH20283	Soybean	plastid	56.84	59.56
KRH03709	Soybean	plastid	57.49	57.87
KRH44155	Soybean	cytosol	30.78	37.28
KRH47127	Soybean	nucleus	30.46	36.88
KRH48684	Soybean	cytosol, endoplasmic reticulum	26.55	34.24
KRH03228	Soybean	nucleus	33.22	33.89
KRH30661	Soybean	endoplasmic reticulum	31.11	33.81
KRH57127	Soybean	endoplasmic reticulum, nucleus	33.39	33.5
KRG98124	Soybean	endoplasmic reticulum	31.11	33.45
KRH39630	Soybean	nucleus	27.85	31.84
KRH74291	Soybean	nucleus	27.69	31.66
KRG94409	Soybean	cytosol	28.99	30.27
KRH68534	Soybean	cytosol	28.83	30.15
KRH56577	Soybean	nucleus	35.18	27.87
KRG93254	Soybean	endoplasmic reticulum	35.18	27.84
KRH51212	Soybean	nucleus	31.27	27.39
KRH01937	Soybean	nucleus	31.27	27.2
KRG96540	Soybean	cytosol, mitochondrion	32.74	26.17
KRH68277	Soybean	nucleus	32.57	25.58
KRH36905	Soybean	nucleus	36.65	19.31
KRH11875	Soybean	endoplasmic reticulum	36.48	18.65
KRH77709	Soybean	nucleus	30.78	17.12
KRH27757	Soybean	nucleus	30.62	16.98

Protein Annotations

EntrezGene:100781743	Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A0R0JVZ4	EMBL:ACUP02003293	InterPro:DEAD/DEAH_box_helicase_dom
EnsemblPlantsGene:GLYMA_05G155100	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005524
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	EnsemblPlants:KRH58901
ProteinID:KRH58901	ProteinID:KRH58901.1	ProteinID:KRH58902.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF363	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0001D62D0C	SEG:seg	:

Description

hypothetical protein

Coordinates

chr5:-:34804564..34812627

Molecular Weight (calculated)

66272.7 Da

IEP (calculated)

8.284

GRAVY (calculated)

-0.477

Length

614 amino acids

Sequence
(BLAST)

001: MRTSWADLAA NSAAENAGPG SSANNVGTGS NLAPTRPVYV PPHLRNRQPA AESPAPAPAY SGPSSGAGNS GSRYAAPRND YRPGYGGGGG GRTGGWGNKS
101: GGWDRGRERE VNPFEEEDNA EEAFSEQENT GINFDAYEDI PVETSGDNVP PPVNTFAEID LGEALNQNIR RCKYVRPTPV QRHAIPISLA GRDLMACAQT
201: GSGKTAAFCF PIISGIMRGQ SVQRPPRGVR TVYPLALVLS PTRELSMQIH EEARKFSYQT GVRVVVAYGG APINQQLRDL ERGVDILVAT PGRLVDLLER
301: ARVSLQMIRY LALDEADRML DMGFEPQIRK IVEQMDMPPP GARQTMLFSA TFPKEIQRLA SDFLSNYIFL AVGRVGSSTD LIVQRVEYVQ ESDKRSHLMD
401: LLHAQRANGV QGKQALTLVF VETKKGADSL EHWLCLNGFP ATTIHGDRSQ QERELALRSF KSGNTPILVA TDVAARGLDI PHVAHVVNFD LPNDIDDYVH
501: RIGRTGRAGK KGLATAFFND NNSSLARALS ELMQEANQEV PAWLSRFAAR SSFGGGRNRR SGGRFGGRDF RRDGSFSRGS SDYYSAGNGS GGGYGGSGGY
601: AGGGYGPGVT SAWD

Best Arabidopsis Sequence Match ( AT2G42520.3 )
(BLAST)

001: MSASWADVAD SENTGSGSSN QNSHPSRPAY VPPHLRNRPA ASEPVAPLPA NDRVGYGGPP SGSRWAPGGS GVGVGGGGGY RADAGRPGSG SGYGGRGGGG
101: WNNRSGGWDR REREVNPFEN DDSEPEPAFT EQDNTVINFD AYEDIPIETS GDNVPPPVNT FAEIDLGEAL NLNIRRCKYV KPTPVQRHAI PILLEGRDLM
201: ACAQTGSGKT AAFCFPIISG IMKDQHVQRP RGSRTVYPLA VILSPTRELA SQIHDEAKKF SYQTGVKVVV AYGGTPINQQ LRELERGVDI LVATPGRLND
301: LLERARVSMQ MIRFLALDEA DRMLDMGFEP QIRKIVEQMD MPPRGVRQTL LFSATFPREI QRLAADFLAN YIFLAVGRVG SSTDLIVQRV EFVLDSDKRS
401: HLMDLLHAQR ENGIQGKQAL TLVFVETKRG ADSLENWLCI NGFPATSIHG DRTQQEREVA LKAFKSGRTP ILVATDVAAR GLDIPHVAHV VNFDLPNDID
501: DYVHRIGRTG RAGKSGLATA FFNDGNTSLA RPLAELMQEA NQEVPEWLTR YASRSSFGGG KNRRSGGRFG GRDFRREGSF GSGRGGYGGG GGGYGGGGGY
601: GGGGGYGGGG GYGGGYGGAS SGGYGGEPPS AWD

Arabidopsis Description

RH37DEAD-box ATP-dependent RNA helicase 37 [Source:UniProtKB/Swiss-Prot;Acc:Q84W89]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.