CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47127	Soybean	nucleus	90.55	85.01
KRH44155	Soybean	cytosol	89.71	84.22
GSMUA_Achr10P...	Banana	cytosol	76.89	73.64
Solyc12g044860.1.1	Tomato	nucleus	73.74	73.28
PGSC0003DMT400083878	Potato	cytosol	76.68	72.85
KXG31614	Sorghum	cytosol	75.21	72.76
Os01t0197200-01	Rice	plasma membrane	75.21	72.47
CDY10596	Canola	nucleus	75.84	72.34
Bra030884.1-P	Field mustard	nucleus	75.63	72.14
CDY02459	Canola	cytosol	75.63	72.14
TraesCS3D01G106000.1	Wheat	cytosol	74.58	71.57
TraesCS3A01G103700.1	Wheat	cytosol	74.37	71.37
VIT_09s0002g02100.t01	Wine grape	cytosol	77.1	71.26
TraesCS3B01G121100.1	Wheat	cytosol	72.9	71.11
AT1G55150.2	Thale cress	cytosol	75.84	68.63
Zm00001d039452_P002	Maize	cytosol	75.42	64.92
HORVU3Hr1G018850.7	Barley	cytosol	74.37	64.72
KRH03228	Soybean	nucleus	64.29	50.83
KRH57127	Soybean	endoplasmic reticulum, nucleus	64.5	50.16
KRH39630	Soybean	nucleus	37.4	33.15
KRH74291	Soybean	nucleus	37.18	32.96
KRH30661	Soybean	endoplasmic reticulum	32.77	27.61
KRG98124	Soybean	endoplasmic reticulum	32.77	27.32
KRH68534	Soybean	cytosol	33.61	27.26
KRG94409	Soybean	cytosol	33.4	27.04
KRH20283	Soybean	plastid	33.19	26.96
KRG93254	Soybean	endoplasmic reticulum	43.7	26.8
KRH56577	Soybean	nucleus	43.49	26.71
KRH38030	Soybean	endoplasmic reticulum	34.24	26.68
KRG97325	Soybean	endoplasmic reticulum	32.98	26.57
KRH58901	Soybean	nucleus	34.24	26.55
KRH71800	Soybean	plastid	33.82	26.35
KRH42811	Soybean	endoplasmic reticulum	34.24	26.33
KRH31589	Soybean	nucleus	32.98	25.99
KRH03709	Soybean	plastid	32.98	25.74
KRG96540	Soybean	cytosol, mitochondrion	40.13	24.87
KRH68277	Soybean	nucleus	39.92	24.3
KRH01937	Soybean	nucleus	33.61	22.66
KRH51212	Soybean	nucleus	33.19	22.54
KRH36905	Soybean	nucleus	43.91	17.94
KRH11875	Soybean	endoplasmic reticulum	44.33	17.57
KRH77709	Soybean	nucleus	38.87	16.76
KRH27757	Soybean	nucleus	38.87	16.71

Protein Annotations

MapMan:16.4.1.1.4	Gene3D:3.40.50.300	EMBL:ACUP02004265	InterPro:DEAD/DEAH_box_helicase_dom	EnsemblPlantsGene:GLYMA_07G105300	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501
GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	UniProt:I1KJ83	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	EnsemblPlants:KRH48684	ProteinID:KRH48684	ProteinID:KRH48684.1	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF269	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
UniParc:UPI00029513AF	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:10194687..10197872

Molecular Weight (calculated)

53135.5 Da

IEP (calculated)

8.832

GRAVY (calculated)

-0.464

Length

476 amino acids

Sequence
(BLAST)

001: DSGLGAPTGF GGSVQHSSSN RRDYDDGGSP KRNLSLDGLP HFEKNFYIES PAVRAMTDAE VNEYRQQREI TVEGRDIPKP VKSFHDAGFP EYVMEEITKA
101: GFTEPTPIQS QGWPMALKGR DLIGIAETGS GKTLAYLLPI YPGDGPIVLV LAPTRELAVQ IQQEATKFGA SSRIKSTCIY GGVPKGPQVR DLRKGVEIVI
201: ATPGRLIDML ESNHTNLQRV TYLVLDEADR MLDMGFDPQL RKIASQIRPD RQTLYWSATW PKEVEQLARK FLYNPYKFFS FKFRSSMMKC NNFCNHCAGN
301: YRGSSDLKAN HAIRQYVDIV LEKQKYDKLV KLPEDIMDGS RILIFMGTKK GCDQITRQLR MDGWPALSIH GDKSHAERDW VLSEFKSGKS PDVKDVKYVI
401: NYDFRGSLED YVHRIGRIGR AGAKGTAYPY FTAANARFAK DLIAILEEAG QKVSPELAAM GSGAPPPPFS CEGSRI

Best Arabidopsis Sequence Match ( AT1G55150.1 )
(BLAST)

001: MSRYDSRTGD STSYRDRRSD SGFGGTSSYG SSGSHTSSKK DNDGNESPRK LDLDGLTPFE KNFYVESPAV AAMTDTEVEE YRKLREITVE GKDIPKPVKS
101: FRDVGFPDYV LEEVKKAGFT EPTPIQSQGW PMAMKGRDLI GIAETGSGKT LSYLLPAIVH VNAQPMLAHG DGPIVLVLAP TRELAVQIQQ EASKFGSSSK
201: IKTTCIYGGV PKGPQVRDLQ KGVEIVIATP GRLIDMMESN NTNLRRVTYL VLDEADRMLD MGFDPQIRKI VSHIRPDRQT LYWSATWPKE VEQLSKKFLY
301: NPYKVIIGSS DLKANRAIRQ IVDVISESQK YNKLVKLLED IMDGSRILVF LDTKKGCDQI TRQLRMDGWP ALSIHGDKSQ AERDWVLSEF RSGKSPIMTA
401: TDVAARGLDV KDVKYVINYD FPGSLEDYVH RIGRTGRAGA KGTAYTFFTV ANARFAKELT NILQEAGQKV SPELASMGRS TAPPPPGLGG FRDRGSRRGW
501: S

Arabidopsis Description

DEA(D/H)-box RNA helicase family protein [Source:TAIR;Acc:AT1G55150]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.