CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 3
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58901	Soybean	nucleus	97.74	98.53
KRG97325	Soybean	endoplasmic reticulum	83.84	87.82
KRH31589	Soybean	nucleus	83.36	85.43
VIT_06s0004g00850.t01	Wine grape	cytosol	51.21	82.98
PGSC0003DMT400010921	Potato	cytosol	78.51	80.73
Solyc01g005960.2.1	Tomato	plastid	77.71	79.64
PGSC0003DMT400081851	Potato	cytosol	77.38	79.3
Os11t0599500-00	Rice	nucleus, plasma membrane	76.9	76.4
KRH38030	Soybean	endoplasmic reticulum	75.28	76.27
KRH71800	Soybean	plastid	74.31	75.29
TraesCS4B01G126000.1	Wheat	cytosol, plastid	72.7	74.88
TraesCS4D01G148700.1	Wheat	golgi	72.54	74.71
Zm00001d048924_P001	Maize	plasma membrane	73.34	74.67
HORVU4Hr1G031280.1	Barley	cytosol, plastid	72.37	74.54
KXG28851	Sorghum	cytosol, plastid	73.51	72.8
TraesCS4A01G141400.1	Wheat	plastid	72.54	68.45
KRH20283	Soybean	plastid	56.87	60.07
KRH03709	Soybean	plastid	57.35	58.2
KRH44155	Soybean	cytosol	30.53	37.28
KRH47127	Soybean	nucleus	30.21	36.88
KRH48684	Soybean	cytosol, endoplasmic reticulum	26.33	34.24
KRH03228	Soybean	nucleus	33.12	34.05
KRH30661	Soybean	endoplasmic reticulum	30.86	33.81
KRH57127	Soybean	endoplasmic reticulum, nucleus	33.28	33.66
KRG98124	Soybean	endoplasmic reticulum	30.86	33.45
KRH39630	Soybean	nucleus	27.63	31.84
KRH74291	Soybean	nucleus	27.46	31.66
KRG94409	Soybean	cytosol	29.24	30.78
KRH68534	Soybean	cytosol	29.08	30.66
KRH56577	Soybean	nucleus	34.9	27.87
KRG93254	Soybean	endoplasmic reticulum	34.9	27.84
KRH51212	Soybean	nucleus	31.34	27.67
KRH01937	Soybean	nucleus	31.34	27.48
KRG96540	Soybean	cytosol, mitochondrion	32.63	26.3
KRH68277	Soybean	nucleus	32.47	25.7
KRH36905	Soybean	nucleus	36.35	19.31
KRH11875	Soybean	endoplasmic reticulum	36.19	18.65
KRH77709	Soybean	nucleus	30.69	17.21
KRH27757	Soybean	nucleus	30.69	17.16

Protein Annotations

EntrezGene:100795756	Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A0R4J3S5	EMBL:ACUP02004832	InterPro:DEAD/DEAH_box_helicase_dom
EnsemblPlantsGene:GLYMA_08G113000	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005524
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	EnsemblPlants:KRH42811
ProteinID:KRH42811	ProteinID:KRH42811.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF363	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487
SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0001D62D0D	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr8:-:8672009..8679074

Molecular Weight (calculated)

66722.2 Da

IEP (calculated)

7.991

GRAVY (calculated)

-0.479

Length

619 amino acids

Sequence
(BLAST)

001: MRTSWADLAA NSAAENAGPG SSADNVGTGS TLAPTRPVYV PPHLRNRQPA AESPAPAPAY SGPSSGAGSS SGAGNSGSRY AAPRNDYRPG YGGGGGRTGG
101: WGNKSGGWDR GREREVNPFE EEDNAEEAFS EQENTGINFD AYEDIPVETS GDNVPPPVNT FAEIDLGEAL NQNIRRCKYV KPTPVQRHAI PISLAGRDLM
201: ACAQTGSGKT AAFCFPIISG IMRGQPVQRP PRGVRTVYPL ALVLSPTREL SMQIHEEARK FSYQTGVRVV VAYGGAPINQ QLRDLERGVD ILVATPGRLV
301: DLLERARVSL QMIRYLALDE ADRMLDMGFE PQIRKIVEQM DMPPPGARQT MLFSATFPKE IQRLASDFLS NYIFLAVGRV GSSTDLIVQR VEYVQESDKR
401: SHLMDLLHAQ RANGVQGKQA LTLVFVETKK GADSLEHWLC LNGFPATTIH GDRSQQEREL ALRSFKSGNT PILVATDVAA RGLDIPHVAH VVNFDLPNDI
501: DDYVHRIGRT GRAGKKGLAT AFFNDNNSSL ARALSELMQE ANQEVPAWLS RYAARSSFGG GRNRRSGGRF GSRDFRREGS FSRGSSDYYS AGNSSGGGYG
601: GSGGYAGGGY GPGVTSAWD

Best Arabidopsis Sequence Match ( AT2G42520.3 )
(BLAST)

001: MSASWADVAD SENTGSGSSN QNSHPSRPAY VPPHLRNRPA ASEPVAPLPA NDRVGYGGPP SGSRWAPGGS GVGVGGGGGY RADAGRPGSG SGYGGRGGGG
101: WNNRSGGWDR REREVNPFEN DDSEPEPAFT EQDNTVINFD AYEDIPIETS GDNVPPPVNT FAEIDLGEAL NLNIRRCKYV KPTPVQRHAI PILLEGRDLM
201: ACAQTGSGKT AAFCFPIISG IMKDQHVQRP RGSRTVYPLA VILSPTRELA SQIHDEAKKF SYQTGVKVVV AYGGTPINQQ LRELERGVDI LVATPGRLND
301: LLERARVSMQ MIRFLALDEA DRMLDMGFEP QIRKIVEQMD MPPRGVRQTL LFSATFPREI QRLAADFLAN YIFLAVGRVG SSTDLIVQRV EFVLDSDKRS
401: HLMDLLHAQR ENGIQGKQAL TLVFVETKRG ADSLENWLCI NGFPATSIHG DRTQQEREVA LKAFKSGRTP ILVATDVAAR GLDIPHVAHV VNFDLPNDID
501: DYVHRIGRTG RAGKSGLATA FFNDGNTSLA RPLAELMQEA NQEVPEWLTR YASRSSFGGG KNRRSGGRFG GRDFRREGSF GSGRGGYGGG GGGYGGGGGY
601: GGGGGYGGGG GYGGGYGGAS SGGYGGEPPS AWD

Arabidopsis Description

RH37DEAD-box ATP-dependent RNA helicase 37 [Source:UniProtKB/Swiss-Prot;Acc:Q84W89]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.